RNA id: XM_022679676.1


Basic Information

Item Value
RNA id XM_022679676.1
length 3318
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC103029280
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17563875 ~ 17571917 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTCGCTCTCCGCCCGCCTTCAGAGCTCGTGCCGTGCTGGAGCAGCTCAGGATGCTCAGCCACGCGCTATACACATACTGAAAcgcacacataaacacacattggagctggagctggagcttccACATGCTGCAGGACCTCACCGAGGACAACCAGGCAGCAACTAACGACCGGCTACAACAAACACGCATATTATCCGAGACAAGAAGAAGGTGGTGGGCGAGATCTCCTCAACTAAAACGCACTGCTGCTCTCTTCTTCAGCTAAGCTGTTTCCAGGAATGGAATCTATCTCGAGCCAGCTTTCCACGGGCACAGATTCCACCTGTTCTCCAACCAGGAAGCAAGAGCTGCAGCCGTGCACCTCGCTAAAGCCCAACCAGGTGAGCGAGACCTCCCTGTACGGGATCCCCATCGTCTCGCTGGTCATCGACGGTCAGGAGCGCCTGTGCCTGGCCCAGATCTCCAACACGCTGCTGAAAAGCTACAGCTACAACGAGATACACAATCGGCGCGTGGCGCTGGGCATCACGTGCGTGCAGTGCACTCCCGTGCAGCTGGAGATCCTGCGGCGCGCGGGCGCCATGCCCATTTCGTCGCGCCGCTGCGGCATGATCACTAAACGCGAGGCCGAGCGATTGTGCAAGTCGTTCCTGGGTGAACATCGGCCGCCCAAACTCCCCGAGAACTTCGCTTTCGATGTGTCGCATGAGTGCGCATGGGGCAGCCGCGGCAGCTTCATCCCCGCGCGCTACAACAGCTCGCGCGCCAAGTGCATAAAGTGCTCCTTCTGCAGCATGTACTTCTCGCCCAACAAATTCATTTTCCACTCGCACCGCACGCCCGAGGCCAAGTACACGCAGCCTGACGCGGCCAACTTCAATTCGTGGCGCCGCCACCTCAAGCTGACTGACAAGGGATGTCCTGACGATGTCACACACGCGTGGGAGGACGTCAAGGCCATGTTTAATGGCGGCAGCCGCAAGAGAACGCTGCCCGTGGGAATCTCGGACAGCGCGCACCCGCCCCACAAAGTGCACGCACCGGGCAGCCGGGCGCATGTTGAGCCGCCTGAAGCGCCACACAAACCCCTGCGCTGCCCGAGTGAGGAGGACAGACCCGGGGTGGCCGTGACCACAGGAGTTCGCAGTTATCCAGTAATCCCAGTGCCCAGCAAAGGTTTTGGGATGCTGCAAAAGATCCCACCACCCCTTTTTCCACACCCATATGGCTTCCCAGCTTTCGGCCTATGTCAGAAGAAGGATGATGGCACCGTCCTGGCAGGAGAGCAGAGCAAAGCAGGCCTGTCTACTGCTGTCTTCTGGCCTGGCACAAAGGACAGTACCTACCCTTCATTTCCCATGTTCTGGCCCACCGTGCCACCATACCACCACCCGCAGCCCAAACCACCCTCTGACCCCCTCTGCATCAGACAGGTCGAGCTGGACCCACCTGAACCAAGTGAACGGCGGTCCAGCACCCCAAAGGATGCCTCACAAGATGGAGAGCGGTGCTCCAGCCGCAGTGAAGAAGACAAGTCCGGGGACGACAGCAGGTCAGTGGAAGGGATAGGAGCTGCCCAGAGGCGAATGAGCTATGTGTCAGCATTCCGGCCTGTGGTCAAGGATGCAGAGTCTATAGCCAAGCTGTATGGCAACAGGGGTCCATACCCTGGAACCAGGGCTGGCTACCTGTCACCTGACTTCCTCAGTGAGAGCTCCAGCTACAGGTCAGTGTCTCCGGACATGGACAGTGTGGATGATCCGGATGTTGATGTAGAGTCCAACAAAGTACAAGAGGATGATGAGTGCCTTCAGCTTTCTGTGGATGACcagcacagccctccatgtctGACAGCAATACACAGTGATGGGGTAAAGGGTCATGAAGAAGACACTGGCCACCTAGCCACTATGAGTGACCCACATACGACTGACTCAAGTGAGGCACGCTCTTGTGATGTGGAGAAGCAGAGCAAAGCACTGTTGGAAAGCAGTAAAGCCATGGTACGATTCCAGGTGTACTCACGCGAGAGGGACGAGCAGCAGATGAGCGGCGCGTGCTTTGGGTCAGCGGCCCCATATGAGCGCGAGCCACGGGAGGCCAAAGTTAAGGAGGCGCATGAGGAGGAACCCTCGTCCACAGTGGAGGAGATGGAGCCGAGGACGCAGAGCGGAGTGTGTAAAACAGGCCCGAGGGAGGCCAGCGACGATATGGAGGCAGTGCGCATTGAACCAGGCCGAGGAGCGCTGATGATCgaaaaaaacatagaacacATGGCGAAGGAAGAGCTGCAGAAACAGCTGGTGGAGCAGGTGGAGCTCAGAAAGAAGCTAGAGAGAGAGTTTCAGAGTCTGAAAGACAATTTCCAAGACCAAATGAAAAGAGAGCTCTCCTATCGAGAGGAAATGGTCCAGCAGCTGCAGATTGTGCGAGACACATTGTGCAGCGAGTTGGACCATGAAAGAAAGGCTCGTTATGCTATTCAACAGAAGTTAAAAGCTCACGACGCACTCCACCATTTCTCGTGCAAAATGCTGACCCCTCGTCATTGCTCCGGGACCTGCACCTTCAAGCCTCCTCTACTACCACCGTGATGCCTTTAGGTCCTCATTCATTTCAAGACTTCTCTGGACAGGGGCACTGCTTTACCAATAAGCAACAAAAAAGACATTCTCACACCAGTGCAAGATCTACAAATATAAACCTGGAATAAGCAAGAGTGTATGGTAGAATGCTAGCTCTCCAACTGTAATtagaattaaatgaaaaaaaaaaacatcttattgtatgtactgtataatttatataaaaaatccaGCTCTTCATTAAAGAAATCTGACATGTTTCATTGAAACTATGACCATCGGTTTTGGAAAATGACTAAGATACTTGTATTAGGTGGCTTTGTGCAAtgcatatattatgtattataattcATTTTCTGTGCTACTCTTTCTGTTGGTGAAATGTTAGGGCACTTGGTTGATTAAGTTAGACACTCCAGTAACGTATCACTGTATTGTACAATTTAATTTAACCCATGTCTCATCCATGAATGTTGTTTGTTCTCATCTGTTTCAACTGTGTAAATTATTgatgtaaagcactttaaataGGCAAAAAATACCAGAATGGCGGAAGTGTGTATTAAATGATCTCGTCTGAGAGGACTACACTATCATGACCTTTCTGGCAACAATGATCTACATGTTATTATTCACTGTGAGTTCAATTTTCCAATGGAGAGTACATGGCAGCAACCCTGTATTACAGGGTGCTCTTCATCATATCccaatacacaaatacacaaatgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215551 lncRNA upstream 106898 17455315 ~ 17456977 (+) True G159017
TU215548 lncRNA upstream 112543 17448832 ~ 17451332 (+) True G159014
TU215532 lncRNA upstream 191854 17328370 ~ 17372021 (+) False smad6
TU215533 lncRNA upstream 235678 17327253 ~ 17328197 (+) False smad6
TU215516 lncRNA upstream 279993 17283467 ~ 17283882 (+) True G158991
TU215567 lncRNA downstream 24142 17596059 ~ 17599354 (+) True G159028
TU215675 lncRNA downstream 298090 17870007 ~ 17870468 (+) True G159115
TU215685 lncRNA downstream 355071 17926988 ~ 17931371 (+) True G159120
TU215686 lncRNA downstream 358719 17930636 ~ 17931371 (+) False G159120
TU215684 lncRNA downstream 359547 17931464 ~ 17938088 (+) False G159120
XM_007249148.3 mRNA upstream 65104 17493793 ~ 17498771 (+) True c18h15orf61
XM_007249149.3 mRNA upstream 70944 17458015 ~ 17492931 (+) True iqch
XM_007249152.3 mRNA upstream 116082 17425218 ~ 17447793 (+) True LOC103027004
XM_007249251.3 mRNA upstream 191669 17327100 ~ 17372206 (+) True smad6
XM_022679672.1 mRNA upstream 262193 17295207 ~ 17301682 (+) True LOC107197433
XM_007249145.3 mRNA downstream 5475 17577392 ~ 17604549 (+) True LOC103025173
XM_007249144.3 mRNA downstream 38960 17610877 ~ 17622128 (+) True morf4l1
XM_007249142.3 mRNA downstream 53137 17625054 ~ 17645249 (+) True LOC103024336
XM_022679682.1 mRNA downstream 191774 17763691 ~ 17797748 (+) True LOC103039437
XM_007255977.3 mRNA downstream 377213 17949130 ~ 17958434 (+) False ddb2
XR_002651250.1 other upstream 374624 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other upstream 374624 17177675 ~ 17189251 (+) True zwilch
trnal-cag_11 other upstream 800267 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 1184052 16379259 ~ 16379823 (+) True G158779
TU214760 other upstream 2427677 15133947 ~ 15136198 (+) False LOC111194769
TU215929 other downstream 954469 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 954469 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 954469 18526386 ~ 18576437 (+) False necab2
TU216418 other downstream 2613599 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 3164681 20736598 ~ 20737049 (+) True G159728

Expression Profile