RNA id: XM_022679687.1


Basic Information

Item Value
RNA id XM_022679687.1
length 2113
RNA type mRNA
GC content 0.51
exon number 5
gene id kbtbd4
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17964383 ~ 17968936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACACTTGTCAGCGCTGACATCACCAGCAGCGCGCCGCCCTGCACAGCAAAACATCACACACGCGCTTCACCTGAGAGTTTCAGCTGGAAGTTCCTGCAAAAGCCTGCTGAGGAGACGCTGCCTTCACCCAGCAGATGCCATGGAGTCCGGGGATGATGGGGGCCTCAGTGTGGGAGGCTCGTCCGGAGAGGAGAACTACTTTCAGGGCTACACGTTCACAGACCGCTCCCACTCCAGCCGCGTGGTGAAGAGCATCATGGACCTGTGCCTGGAGGACGGCCTATTCGCCGACGTCTCCATCACGGTGGACGGCAAGGAGTTCCAGCTGCACCGCCTGGTGCTGTCGGCGCAGAGCAGTTTCTTCAGGTCCATGTTCACCTCCAACCTCCGAGAGGCCCACGACCGCAACATCGAGCTTAAGGACGTGAGCGCATCCGTCTTCCAGCTGCTGGTGGACTACATCTACCACGGCACCATCAAGCTGCAGGTAGAAGACCTGCAGGACACCTACGAGATGGCTGACATGTACCAGCTGACAGCCCTGTTCGAGGAGTGCTCCCGCTTCCTCTCGAGAACAGTGGAAGTCAAGAACTGCCTGCAGGTGATGTGGCTGGCAGACAGGCACAGTGATCAGGAACTGTACACAGCAGCTAAACATTGTGCCAAGATTCATCTTGTCCAGTTGCACCAGACAGATGAGTTTCTCAACCTGCCTTTGCGTCTCCTCATGGACATCATCAAAGATGGCGTTCCAAGCTCTCAAAATCCAACAGCAGCAATCGAGTCTTGGATAAACCACAACAAAGTTGAGCGAGAGGAGTTTTCAGACATGCTCTCAGATGGCCTAAAGGAAATTGGTGAGAACGTGCACATCTACCTGATAGGTAAGGAGGACACACGAACACACTCACTGGCTGTGTCACTTCACTGCGATGAGGACGACGCCATCAGTGTGAGCGGTCAAAACAGCCTGTGCCACCAGATCACAGCTGCCTGTAAACATGGCGGTGACCTGTACGTGGTAGGTGGCTCCATCCCACGCCGTATGTGGAAGTGCAATATGCACACCATGGACTGGGAGCGCTGTGCTCCGCTGCCTCGTGATCGCCTACACCAAGCGCTGGTGTCTGTGGCCAGTGAGGATACCATCTACTCGTTAGGGGGCAAGACCATAAAGGACACTTTGTCCAGTGCAGTGATCTTCTACAAGGTGCGGGACAACATGTGGACTGAGACGAGCCAGCTGGATACAGCCGTGTCGGGTGCTGCCGGAGTCAACCTAGGTGGGACCATCTATCTGCTAGGTGGGGAGGAAAATGACGCTGACTTTTTCACCAAACCATCTCGCCTTATTCAGTGCCTTGAAACAACCACGCAAAAGTGCCAGACCAAGCCATACATGCTGCCCTTTGCTGGATGCATGCACGCCACTGCTCATAAGGACTTGATCTTTGTAGTGGCTGAGGGTGACTCTTTGGTATGCTACAACCCGCTGCTGGACAGCTTCACCCGCCTTCGCTTCCCGGAGGTATGGAGCTGTGTGCCCTCGCTGTGGAAGGTGGCCAGCTGTAATGGTTGTATTTACGTCTTCAGGGACAAATGTAAAAAGGGAGATGCTAACACATTAAAGTTAAACCCTGCCACTTCTGTAGTGTCCGTGATCAAGGGAATCAAAATCCTGCTCACAAACTGGCAGTTCGTATTGGCCTGATGTTCAACATCGGAACAACATTTCAAATGTTTACATTGTGGGGGACCATGTGGACTTTAAGCCTACAGTTTGCAGTGATGGTGGTGAACATATATTGTAGTAGGAAAAAGCCGTAGTTCAAGACCGTGGTTTTGTTCTTTTGCTTTTGTGTTACAAGCTTTATGCAGTCGTGCAATGTGTTACACTGCTGCCGCACAGTGTCAGTGAAAGTGGTATGAAGTTTGATGGGTacgtttactttacttttttggtGTCAACCTTGAAGTGTGAGTTTTTTAAGTGATTATGTTGCAAACAGTATGAACTACCAATGTTATTGTCTCAGTAGTAATTGATTGTCTTGATACAAAAGTAGTTTGTCAATAAATGCTCACCAGAAAGAAGGTTTGAGTGCAGGTTAAA

Function

GO: NA

KEGG:

id description
K10472 KBTBD4; kelch repeat and BTB domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215688 lncRNA upstream 17700 17942316 ~ 17946683 (+) True G159122
TU215684 lncRNA upstream 26295 17931464 ~ 17938088 (+) False G159120
TU215685 lncRNA upstream 33012 17926988 ~ 17931371 (+) True G159120
TU215686 lncRNA upstream 33012 17930636 ~ 17931371 (+) False G159120
TU215675 lncRNA upstream 93915 17870007 ~ 17870468 (+) True G159115
TU215692 lncRNA downstream 14952 17983888 ~ 17985864 (+) False rapsn
TU215695 lncRNA downstream 26762 17995698 ~ 17996728 (+) True G159129
TU215770 lncRNA downstream 139227 18108163 ~ 18109539 (+) True G159182
TU215773 lncRNA downstream 145069 18114005 ~ 18128429 (+) True G159184
TU215889 lncRNA downstream 442376 18411312 ~ 18411936 (+) True G159272
XM_007255977.3 mRNA upstream 5949 17949130 ~ 17958434 (+) False ddb2
XM_007255975.3 mRNA upstream 5949 17949130 ~ 17958434 (+) True ddb2
XM_007255976.3 mRNA upstream 5949 17949137 ~ 17958434 (+) False ddb2
XM_022679682.1 mRNA upstream 166635 17763691 ~ 17797748 (+) True LOC103039437
XM_007249142.3 mRNA upstream 319134 17625054 ~ 17645249 (+) True LOC103024336
XM_007255981.3 mRNA downstream 2160 17971096 ~ 17985904 (+) True rapsn
XM_007256044.3 mRNA downstream 17057 17985993 ~ 17994370 (+) True LOC103029004
XM_007255970.2 mRNA downstream 35071 18004007 ~ 18010554 (+) True agk
XM_015607532.2 mRNA downstream 35071 18004007 ~ 18010554 (+) False agk
XM_007255967.3 mRNA downstream 54968 18023904 ~ 18030005 (+) False wee2
XR_002651250.1 other upstream 775132 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other upstream 775132 17177675 ~ 17189251 (+) True zwilch
trnal-cag_11 other upstream 1200775 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 1584560 16379259 ~ 16379823 (+) True G158779
TU214760 other upstream 2828185 15133947 ~ 15136198 (+) False LOC111194769
TU215929 other downstream 557450 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 557450 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 557450 18526386 ~ 18576437 (+) False necab2
TU216418 other downstream 2216580 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 2767662 20736598 ~ 20737049 (+) True G159728

Expression Profile