RNA id: XM_022679698.1


Basic Information

Item Value
RNA id XM_022679698.1
length 4570
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC111194773
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18496094 ~ 18500819 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCATGATGAACCGGCTCAAGAGGAAAAACCTGAAGTAAGCCAACAGAGAGACAGTACTTCTACTGCCTTATGTAATATGAACATAACCAATGCTGACCGCACTTCAATGACAGTCCCGGTGTGGCTCTCTAGTGCTGTCAGAAATAGCCCAGAGATCTTGGTGTATGCTCTGTTAGATACACAAAGTAGCAATACATTTGTTACTGAAGATGTGTGCGAAAAACTGGAAGTGCACACTGAACCTGTTAAACTCAAGTTGTCAACAATGACTGACAGGTCAATAGTGAATTGTCTCAGAGCCAGTGGGTTAAAGGTCAGAGGATACAGTTCCGAAGAATGCATTGAACTACCACCAGCTTACACTCGAGAAGCCATCCCGTTGGAGAAGACCAGTATTCCAACTCGTGAAACAGCCAAAGAATGGACACACTTGCTTAGCATAGCTGACGAGATGCCAGATTTGCTAGACTGTCCTGCTGGACTGCTAATAGGCTACGACTGTGTCAGAGCTCTAAAACCGAAAGAAGTCGTATCTGGAGCCGAGCATGAGCCATACGCAGTGAAAACAGATCTCGGGTGGAGTGTAGTTGGTGCCAAAACGCCTACTATTGGTGAAGGAACAAATGCTGGATTCTGTTATCGCATCTCTGTAAAGGAAATTCCACCTATTACACCTGCATGTGCGATTAAGGCTCTAGAGAAAGATTTTCAGGATACAAACCCTTCAGAGGGAACGATCTCTCAAGAAGACATTCAGTTCCTACAAATTCTGAATGAGGGAATTCATCACAATGACGATGGTCATCTGGAGATGCCTTTGCCTTTTAGAGAGCGCCCCCAGCTGCCTAACAACAAACATCTAGCCACAGTTAGGCTGAAACATCTGAGAGGGAAGAtggaaaaaaatcccaaataTAAGGAAGACTATGTTCAGTTCATGGTCAATGTTTTCAAGGATGGTGATGCAGAGGAAGTACATGCAACACCAAAAGACGGGAACGCCTGGTACATCCCACACCATGGGGTTTACCACCCGCGAAAGCCAGAGAAGATAAGAGTTGTCTTCGACTGTTCTGCCAAATACAAAGGCACTTCGTTGAATGATCACCTTCTCACGGGACCTGATTTAACCAACGCCTTGACTGGAGTGCTGTGTCGGTTCCGACAGTATCCAATTGCAATCAACTGCGATGTCGAGAAAATGTTCCACCGCTTTCATGTTACTCCAGAAGATAGGGATTTCATGAGGTTCCTGTGGTGGGAGAATGGGAACACAACGAGTGAACCTAAGGAATACCGCATGAGGGTGCACATATTTGGAGCTGCATCATCGCCAGGATGCGCAAATTATGGCATGAAATACCTTGCCACCAAATATGAGATTGAGTACCCCATGGCAGCAAGCTTCATCCAGAGAAATTGTTATGTGGATGATGGATTGGTTAGTCTAGCTACTGTTGAAAAGGCCAAGCAACTTGTCCATGAAGCAAGAGAAGTCTGTCAGAAGGGACAACTGCGACTGCACAAGTTTGTTTGCAATAACAGAGATGTTTTGGAGACCATTCCAGAGAGTGAGCTTGCTGTAGAAGTGAAAGATGTAGACTTAAACTACACAGAGCTACCAGCCCAGAGAGTGCTAGGAGTGAAGTGGAACATAGAAAGGGAtgtcttctcattcaatgtggtCCAACAAGAAAAACCAGACACTCGACGAGGCATCTTATCTACAGTCGCCAGCATATATGATCCATTAGGATTTCTGGCCCCCTACATCTTGACTGGGAAAAGAGTCTTGCAAGAAATGTGCAAGCGAGGTGTAGGCTGGGATGAGCCTGTCCCACCAGAATTAAGGCCAAAGTGGGAGACATGGCTCAATGACCTGAACAATCTTCAAACCATTCAAATACCCAGGTGCTTTGTACCCAACAATCTTGGCACGATCCAGAAGATTGAGCTGCATCACTTTTCTGATGCTAGTAATGATGGATATGGGCAGTGCTCTTACATACGGATCGTAGCTGAAGAACAAGTGCATTGCACTTTAGTTATGGCCAAAGCTAGAGTAGCACCTATGAAGATTGTCAGTATCCCACGTCTGGAGCTGACCGCGGCCACAATCTCTGCAGTCGTAAGCAAGATTCTTAGAAAAGAGCTGGACCTGAGGATAGATGCTGAGTACTTTTGGACGGATTCACAAGTGGTACTGGGGTACATCAAGAACGATGCCCGGCGCTTTCATGTGTTCGTCGCGAATCGGATCCAGAAAATCAGAGAGTCTACTGACCCCAATCGATGGTTTTACATTGAAACAAGTCAAAACCCTGCAGATCATGCATCTCGAGGACTCAAGGTGGCAGATCTAATGGCATCGGATTGGCTAAGAGGACCCAATTTCTTATGGGAACAGGATATTGTGACTAACCCAGCAACTCCAGAGCTTCTAATAGGTGACCCAGAGGTCAAGGTACTGAAAACTGATGTTGTGAAGGAAGCTGATCTCTTGAAAAGGTTGGAAAGATTTTCAGACTGGGTCACTTGCCTTAACGTCATTGCTCGTATTCAGAGGCTGGCACATAGGGACATATCTGGGCCTGTTACTGTAGAAGAGCGAAAGAAGGCAGCTCTCGTAGTGATTAAGGCAGCACAAAGGGAAGCATTCGGAGAAGAGCTGAAACTGCTTAGCCAAGCACAAAAACTCAGGAAAACTCATAAGATGTATGAGCTTGACCCGTTTCTTGAGGACGGAGTGCTCAGAGTTGGTGGCAGGTTAAGAAGGTCATCGGCTTCGCTTGAGTTCAAACATCCCGTAATACTCCCGAAAGAAGGCATCGTAACGCACTTGATACTTGACCATTGCcacaaaagaacacagcacCAAGGCCGAGGGCAAACACTAAACGAGCTCAGAGCCAACGGATACTGGATCATGGGTGCCAGTAAAGTGGTGGCCAAGCATATCAAAAGCTGTGTGACATGTAGGAGGGTGCGGGGCCGAACTGAAGAACAGCGCATGGCTGACTTGCCTGTTGATCGAATAGAGCCATCACCTCCTTTCTCATATACAGGTATCGACTGCTTTGGCCCTTTCTACACGAAACAAGGTAGAAAGGAGTACAAGAGATATGGGCTGTTGTTAACATGCCTGAGCTCAAGGGCCATCCATATCGAGATGCTCGAGGATCTGACAACAGATGCATTTCTAAATGCATTAAGATGCTTCATTGCAATAAGAGGAACAGTCAGACAAATCAGATCTGACCAGGGTACGAATTTCATAGGGGCAAAAAATGAGTTGGGAAAGTGCTTAATGGAACTTGACAAGGAAAGGATTGCGACTTATCTGGCAAGAAAGGAATGTGACTTCCTTATGAATGTTCCTGAAGCCAGTCATATGGGAGGCATATGGGAACGTCAGATACGGACGACCAGAAGCGTGATGAGCTCTGTCCTTGCTCAGGCGAAAGGACGACTGGATGACTCCTCATTAAGAACGTTCTTCTACGAGGCCATGTTTATAGTCAACAGTCGTCCGCTGACAACGAACACCCTCGCTGATCCCAAAAGCACTGAACCCTTGACACCCAATCATTTGCTTACTATGAAGCCTTCGGCACCCCTTCCACCTCCTGGGAAGTTCGTTCAAGAGGATCTGTATGCAAGGAAACGATGGCGCAAAGTGCAGTATCTCTCAGAACAGTTCTGGAGCAGGTGGCGCCGAGAATACTTAACCAACATCAGCCTTCGTCAGCAGTGGCATACAACCAGACGGAACGTGCAGGTTGGAGATGTAGTCATTGTTAAGGATGAAAACACTCCTAGAAATGAATGGCCACTAGCTAAGGTTGTTGAGGCACAGGAAGATGATGATGGTCTTGTACGAAAGGTGAAAATACAAGTAGGCCAAAGTAGGTTAGGACCAAAGGGTGAGCGCTTAACTCAGCCTTCATTTCTTGAGCGTCCAGTCCAGAAATTAGTTGTGTTAGTTGAACATCATTCAACATAGCTCGGCATTAACGTAAATGAAAAGAGCCAGTCACCTAATACAACAGCCATTGATAGCTTGAGTTTGAAGGTATTGAAAAATTACAAGTTTATTTCTTTCAATATAGTGAAGTACATCTTTGTAATTTTTGGTGGCAGTGTAGCGAATGCAGTaatataagcatttattttgtgtgaatttatttatttattttattttcttatttgatgtacattttatatttgtacatttcttgattataatgtgtatatttcagaaaattgtttaattaataacattGTCTGACCACGTCAGCAGTTCATCAGTTGGTCACATGGTGCACTTgggtaaaaaaattaagtttcgTTTTTAGTCAGTCGGTGAGTGCAAGGAGTCGAAAAGGACAAAGGGCTGTGAAATAGGACAAAATGGACTTCTAGCAATGCCTAACCTTCTGGTTGGAGGTGCACACGTGTTCACGGTGGTCTTGGGCGTTGTAAGGCAGAACCTACCTGTAATAAAACGTTTGAACCATCAGTCGGAGTGCGGCACTTTTATCAACCAGTTAAGAAAAAGTTGGGAGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215891 lncRNA upstream 67668 18428155 ~ 18428426 (+) True G159274
XR_002651207.1 lncRNA upstream 82144 18413361 ~ 18413950 (+) True LOC111194744
TU215889 lncRNA upstream 84158 18411312 ~ 18411936 (+) True G159272
TU215773 lncRNA upstream 367665 18114005 ~ 18128429 (+) True G159184
TU215770 lncRNA upstream 386555 18108163 ~ 18109539 (+) True G159182
TU215933 lncRNA downstream 7592 18508411 ~ 18508695 (+) True G159298
TU215998 lncRNA downstream 112345 18613164 ~ 18615494 (+) True G159344
TU216004 lncRNA downstream 129651 18630470 ~ 18630853 (+) True G159347
TU216006 lncRNA downstream 151631 18652450 ~ 18652676 (+) True G159349
TU216007 lncRNA downstream 151938 18652757 ~ 18657402 (+) True G159350
XM_007256233.3 mRNA upstream 4568 18472936 ~ 18491526 (+) True chka
XM_015607592.2 mRNA upstream 4568 18472936 ~ 18491526 (+) False chka
XM_015607604.2 mRNA upstream 27815 18462098 ~ 18468279 (+) True kmt5b
XM_022679695.1 mRNA upstream 60979 18415528 ~ 18435115 (+) False arpin
XM_022679978.1 mRNA downstream 24709 18525528 ~ 18576420 (+) False necab2
XM_007256219.3 mRNA downstream 261866 18762685 ~ 18813328 (+) True ranbp10
XM_015607589.2 mRNA downstream 377316 18878135 ~ 18980992 (+) False ripor1
XM_022679713.1 mRNA downstream 403943 18904762 ~ 18980992 (+) True ripor1
XM_015607588.2 mRNA downstream 431008 18931827 ~ 18980992 (+) False ripor1
XR_002651250.1 other upstream 1306843 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other upstream 1306843 17177675 ~ 17189251 (+) True zwilch
trnal-cag_11 other upstream 1732486 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 2116271 16379259 ~ 16379823 (+) True G158779
TU214760 other upstream 3359896 15133947 ~ 15136198 (+) False LOC111194769
TU215929 other downstream 25567 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 25567 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 25567 18526386 ~ 18576437 (+) False necab2
TU216418 other downstream 1684697 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 2235779 20736598 ~ 20737049 (+) True G159728

Expression Profile