RNA id: XM_022679718.1


Basic Information

Item Value
RNA id XM_022679718.1
length 4707
RNA type mRNA
GC content 0.51
exon number 7
gene id bcar1
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 19122919 ~ 19236859 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgagagagggagagagagggagggagctGGAGAGCATAGAGCATAGACACAAACAGAaggacagatagagagagagggaaaaagagaagtGTATAGGACAGACTCATTCTTGGCCTATGAGATCACGGAATTGGACTATGTGCGCCTGTCTGCCATGACTTTGTGACTTTTTCGCCCAACAGCGAGTAGTGGAAGTTTGGGACTGGAGGTGGCCGACCTGAgggattttttcttccttttttcttttttattggtgtgtgttgtttgtgtctCCGGGACCAAATCCTGGGCCGTTGAGAGACGCCTGGAGTCCCAGCGGCTCAAACAGCAGGGCTGAAAATGAATTATCTGaaCGTGCTGGCCAAGGCCCTGTATGACAATGTGGCCGAGTCTCCGGATGAACTGTCCTTCCGGAAAGGGGACATCATGACAGTTCTGGAGCGGGACACGCAGGGCCTGGATGGCTGGTGGCTCTGCTCGCTGCACGGGCGCCAGGGCATCGTGCCAGGGAATCGCCTCAAGATCCTGGTGGGCATGTACgacaagcagcagcagcagcaacagtctCCTACCCCACAGACCAGCCTGCCTGCCAGCGCCTACACCAAACCCTCGCCTGCTACCCAGTACACAGCCATGCACCCCGCCTACACCTGCACCAGCCCCCCGACCCCAGGCAAACCAGACGGTGTCTACATGCTGCCCCCCAGCCACAGCAAAAACACACCTTCTAGCCTGTACCAAGTTCCCACAGGCCCCCAGACCCCACAGCCCCAGCCCAAAGCCCCTGCCCTCACACAGAAACAAGGCCACGGCAAGTACCATCCAGCTGGACAGGAAATCTACCAGGTGCCCCCCTCCATGGGCTCTCCTGGGCAAGATGTCTACCAGGTGCCCCCTTCAGCCGGAGGGCCGTGTCCTGGGCAAGATGTGTACCAGGTGCCCCCTTCTCTGAACCAGAAACAAGACATTTACCAGATCCCCCCTTCCATGGAGAAAAGAGGCTGGGACTCTTCTAAGACTTTGGGGAAGgtgGTGGTGCCCACGCGGGTTGGACAGGTGTATGTGTACGACACAGGGAAATCAGAGCAGGATGAATACGATGTTCCTCGACACCTGCCTCCCTCCCAGGACATCTACGACGTGCCACCAACCCGTGCTCAATACAACCAACAGGTGTACGATACTCCCCCTATGGCAATGAAGGGCCCAACCAGCAGAGACGCACAGGAAATCTACGACACTCCGCCCAGCGTGGACAAGAACCAGCTGCTCTCCCAGCAAACGGTGTATGACTTCCCCCCTTCAGTAAGCAAGGATGTTCCAGACGGTCTCATCAGGGATGAAACATATGATGTCCCCCCTCATTTTGCCAAAATGAAGTGTCTCGACTCTCAGATTGAAGCGGGTTCAGAACCACCAATTCCAGAAGACGTGTATGATGTTCCACCACCTCCACTAGCAGGAAAGCCCTTGCCTGAGGCACAGGAAATTTACGATATCCCTACCAGTTTGCGTAAGACAGGACCACAGGATCAGCACCCTGCAGATGTCTATGACTTCCCCCGCGAGCGCCCGGCCATGGCAGAGGAGTCTGGAGACTACGTGTACGACGTGCCCCCGCAGGTTGTGCGTGATGCAGCAGCCACCGAGGAACTGACAGTAAGCTTCAAGCGTTTGTCAGCCTCAAGCACTGGCAGTACACGCAGCAACCTCTCCACCTCATCCTTAGACATGGTGCCGGTAAGGGACAGCACGGGTCCAGGTCGCCTGCTTTCCCTGGACCTGGAGCAGGCAATGGAACGCCTGTCCCGCTTGCAACAAGCCGTAGAGAGCTCAGCCTCACTACTCATGTCCTTCATCAGTGGCAACTGGCGCAGCCCCGTGCAGATGGAGTCCAATCTGCCGTCCATCCGCCAGGCAGCCGAGCGCCTCCGGGCAGCCGTCCGGGACCTACTGGAGTTTGCCCGCGGTGCCGTGGCCAACGCTGCCCAGGCCACTGACCGCACCCTGCAAGCCAAGCTCAACAAGCAGGTGCAGAAGATGGAAGAATCCTTCCAGGGCCTGGTCAAGTACACTCAGGCACTAGACACCATAGGCTGGGCACCTGCTACCCTTCTTGCAGCACCACCAACTGGCACCGGAGGGGACGACCTGGACAGGCTGGTTATGTGCGCCCGGGGAGTGCCCGATGACACCAAGCAGCTGGCATCTTTCCTCCACGGCAATGCTTCACTACTCTTCAAACGGACAaacaagcagcagcagctgccgCTACCTCCTGTTCCAGGTGTCGGAGAAGTGCCAGGTCAGTTGACTAACAACAACAACGTTTCAGCCTATCAGACTGGCGTGCCCGAGAGGGCAAACATCCAGTCCCGCCCACTGCCCTCGCCACCCAAGTTTTCATCCGAGGAGGAGACTCCCGACAGGCCGTACGAGACCACAGAGGAGGGCTGGATGGAGGACTACGACTACGTGCATTTACAGGGAAAAGAGGAGTTTGAGAAGAACCAGAAACAGTTAATGGAGAAAGGAAGCATCAACAGACACAATAAGACCCAACTAGAGCAACAGCAGCTTAAACAGTTCGAGAGGTTGGAGCAGGAGGTCAGCCGGCCAATCAACAACGACATCTCGGGTTGGAATCCACCTTCACACTACCCTCCGCCGTCGCGCAGTAAGCTGTGTATGGGCGACCggcagctgctgctgttctaCTCCGAGCAGTGCGAGGCCAACATCACCACGCTGACCAACGCCATCGACGCCTTCTACTCGTCCATCAACAACAACCAGCCGCCCAAGATCTTCGTGGCTCACAGCAAGTTTGTGATCCTCAGTGCCCACAAGCTGGTCTTCATCGGCGACACGCTCTCCAGGCAGGCCAAATCTCCAGAGGTGCGCAGCAGAGTGGCCCAGCACAGCAACACGCTCTGCGACAAGCTCAAAGACATTGTGATGAGCACCAAGACTGCGGCCCTCCAGTACCCGTCTCCTGGGGCGGCCCGGGAAATGACCGAGAGGGTACGGGAGCTTTCCGGCTGCACCCAGCAGTTTCGCATGGCTCTCAATCAGCTGCTGGCCATGTGAACTGAACTGCGGGGCAGTCAGGGTCATGTACAAACACTGAGGGGGGGCGACACAAGCACCAAGTCACACGTGAACTTTAATGGACCTTTGATGAATGGACTTCTTCCACCAGATGCTGTGGGCTTTTTATTCCCAAAAAAGACTGAAACAGTGCCATTGGGTGTAAATGAATCAATGTAAATATTTGCACTTCTGTAAAGTGCAGGTGTGGGTTTGGGGGAGGGGACGCGAGTAGAGGGACAAGCGAAGAAAAAAGTATGAaccatatttcttttttcttttcttttttttttttcaaacagttGATAAGAGAAAACAACTCAAAGTAGTTTTTAGATACgatccattattattattgctatattattattattattataattattatcatcattattattattattattattatgagatgTTGATTAAGGATGTCAAATTGTACTTGTATGTAGGAGTacttaatcatgttttacatcCAAAATCAGTGATGAGGATTTTTAACGAATTTGCCTGTTTGCATGAGGAAGGCGAGGACAGCAGATAAAGACATGCAGTGCTTCAGGTGGAGCTGTTCCAGGGTGGACTCAAAGCATGCTGGACAACTTTAATACACAAAGTGAGTGAGCTTCAGCCTgcctagttaaaaaaaaaaaagacccagaATGAACGCAGGGGGCTGTTAAAAGCAAAAGGTTGGATGTAGATGATGTGACATGACTCAAAATCTGTCAACAAGGGTGTGGAGCCGAAACcagttaaagagttaaagaattAACTGCTTGCTCGCCACCTCAGTcctccctctcgctctctcctgcTTGGACTATTCTGAACAGGTTTGTTTTGTCACTTCCTGTGCACTGTTCCAGATCTTTCCAATGTTCTAGATGAGGTTTTCCTTTTTCCAGTCTGGGGTAAACCCGCCTATCAAGGCTGTTCTTCACTGCAGTATCGCGCCCTGCGGGACAGGGTCATCACAGCCAGACGGTTCTACACTGACAGGAGAAGACGCTTCTTTCTCGACAGTTCTGTTCCTACAAAGATGCTCTTTTACTCCCAGACTCTCTCATGCTTTACCACCTCATAGACATACACTGCTGGTGTATTAAAACAGcccattttattcaaacaccTCAACACCCCCCAAAGACCAGCTGAAAACAGACGTATCTATACTGTAATGTGGGCAGCGGTTCTTCTGTATAGTCACTCAGCTTTTTGTCAAAGAAGGGCAGTACGGAGAAGAAGCCCAAACATCTGCCTCAAACTGTCGTTCCTTGCCTTTTAACTCCCTGTTGGTTGTATTCTAAATATCAGAATATGTCAGCAGACGTAGTTCAATGAAACTTATTATATCTTTTAAGTACTGCAACATGTTGTTGTGCATATAGTCAAAATCCCTAtccagtaaaagaaaaaaaaaaaaaagaacattgaaAATGAATCGTGACCTGGTATTTGGTATTGTAATGTTATTCTGTTCTCAAATCTGTGTTTAAAGATTTGAAAGTACTTTGAGGTAATATGTTAAGAACATACTGTAAATTGcataactggaaaatatatgtttaatatattttcattaaaaaaataaatcaaggcATCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216064 lncRNA upstream 379819 18786541 ~ 18810070 (+) True G159398
TU216054 lncRNA upstream 437735 18738284 ~ 18752154 (+) True G159389
TU216052 lncRNA upstream 453216 18736402 ~ 18736673 (+) True G159388
TU216026 lncRNA upstream 455075 18732483 ~ 18734814 (+) True G159365
TU216023 lncRNA upstream 461852 18727015 ~ 18728037 (+) True G159363
TU216181 lncRNA downstream 22437 19259296 ~ 19262326 (+) True G159480
TU216298 lncRNA downstream 326890 19563749 ~ 19563966 (+) True G159579
TU216302 lncRNA downstream 348549 19585408 ~ 19585837 (+) True G159583
TU216304 lncRNA downstream 349589 19586448 ~ 19586972 (+) True G159585
XR_002651254.1 lncRNA downstream 370557 19607416 ~ 19665139 (+) True LOC103038177
XM_007256215.3 mRNA upstream 78212 19076082 ~ 19111677 (+) True cfdp1
XM_022679717.1 mRNA upstream 124733 18997053 ~ 19065156 (+) True carmil2
XM_022679715.1 mRNA upstream 198178 18983602 ~ 18991711 (+) False ctcf
XM_007256213.2 mRNA downstream 16498 19253357 ~ 19258034 (+) True nudt21
XM_022679723.1 mRNA downstream 80514 19317373 ~ 19422913 (+) False gnao1
XM_022679724.1 mRNA downstream 80519 19317378 ~ 19433125 (+) True gnao1
XM_022679722.1 mRNA downstream 80523 19317382 ~ 19433125 (+) False gnao1
XM_007256208.3 mRNA downstream 214916 19451775 ~ 19496575 (+) True cbfb
TU215929 other upstream 613452 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 613452 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 613452 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 2000638 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 948657 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 1499739 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 1772443 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 2910985 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 3385980 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile