RNA id: XM_022679722.1


Basic Information

Item Value
RNA id XM_022679722.1
length 3903
RNA type mRNA
GC content 0.45
exon number 8
gene id gnao1
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 19317373 ~ 19433125 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTTCGCCTCCGCCTCCACCGCCACTACCGCcgctgctgccgccgccgccCAGTAGAAAAGGACAGATAgagctagatagatagacccCCTCCCCTCCACCGCTCCCCCTCCGCCCGAGGAACCACCGACACGACCAAGAGAGACGGAGAGCCGAGCCGGTTCacctacagcagcagcagaagcagctccTTATACAGCTAGATTAGGTTATCTCCACCAGGCTGCGTGTCTTCGTGTCGTTTTGCGGGatttttctgcttcttttaaTGCTATAGCTAGAGCCGTCGTtgtgagtgagcgagtgaaagagagagtgtgagtgagagagagagaaagagggagagaaagagagagaaagagagagagagagcgctagGAGAGAAAGGTAGAGGAGATAGATAGGGAAGAAATCTCgaggtgaaataaaaaataaaccacgGAGTGCTCGCTCGCTTCCCCCCCTCGCACGTCGCTTCTCGCCGGTTTCGGAGCTGAAAGAAAGAGCCTGCGGTCCGCCTAGTCATGGGATGTACACTGAGCGCCGAAGAGAGAGCGGCTCTGGATAGGAGCAAAGCCATCGAGAAAAACCTGAAAGAGGATGGAATCACTGCGGCCAAGGAtgtcaaactgctgctgctggGAGCTGGGGAGTCTGGTAAAAGCACCATCGTGAAACAAATGAAGATTATTCACGAGGATGGCTTCTCTGGAGATGACGTGAAGCAGTACAAGCCTGTGGTCTACAGCAACACCATCCAGTCCCTGGCTGCCATCGTCCGTGCTATGGACACCCTCGGCCTGGAGTACGGGGACAAGGAGCGCAAAGCTGATGCCAAGATGGTGTGTGATGTCGTGAGCCGCATGGAGGACACTGAACCTTACTCCCCGGAGCTCCTGACCGCCATGATGCGTCTGTGGGCCGACTCGGGCATCCAGGAGTGCTTCAGCCGTGCCCGCGAGTACCAGCTCAATGACTCCGCCCAATAttACCTAGATAGTTTAGATAGGATTGGTGCTGCAGACTACCAGCCCACAGAGCAGGACATTCTGAGAACCCGAGTGAAGACCACTGGGATTGTAGAGACCCACTTCACCTTCAAGAACCTGCACTTCAGGCTGTTTGATGTGGGAGGTCAGAGGTCGGAAAGGAAGAAGTGGATACATTGCTTTGAGGATGTAACCGCCATCATCTTCTGTGTGGCTCTGAGTGGATATGACCAGGTGCTGCACGAAGATGAGACCACGAATCGCATGCACGAGTCTCTTATGCTGTTCGACTCCATCTGCAACAACAAATTCTTCATTGACACTTCCATCATTCTCTTCCTCAACAAGAAAGACCTGTTCGCTGAAAAGATCAAGAAATCGCCCTTGAGTATCTGTTTCCCGGAGTACACGGGCCCCAACACTTACGATGACGCGGCTGCTTACATCCAAGCACAGTTCGAGAGCAAGAACCGCTCGCCCAATAAGGAGATCTACTGTCACATGACCTGCGCCACGGATACAGGGAACATCCAGGTGGTGTTCGACGCCGTCACCGACATCATCATCGCCAACAACCTGCGAGGCTGCGGCTTGTACTGAGCCCCTCCCTCTCGTCGAGCCACTTCTTTGGAAATGATTAAAATGCAAGttggtaaataataataatgataattttaaaataggcatatacatatatataaatatatatatataaaaatgtttttagtttgtcTTTCCAAGAGCTGCCAACAGAACTGATTTCTTATAGAAACCCAGCCTTTACCGTTTTAGAACAAAGTTgggacttttttttcttttcttttttttgctgtttgatgttttattttcccGTTTTTCCACTGTgtctttttctgttgttttaacTACACAATCCTCATTTTTTGTTCtctaaaatgtgtttcttttactatatttttatgttttttgtttattgtatgtatatttattacgTGTATATCAGTCGGGGGGCTGGCGGTTACACGTTTTGCCTGAGTATACAACATTGCGGTAATGATgtaatgagaagaaaaaaagacgACGATAGCTATATCAACGGCGTAGACAGCGACGCTAGACGTGAGCACTACAGTTAAAGTCAGTCGAGCCAAACTGCGGTTGTAGCGTGTCCCTGTTGTTCGGGTTTTTATCAGACTGGGTTTTCATGGCGATTCCATTCGTTCTGTTCAGCTGTTCAATGTTCTAGAGAAAGAAAACCCCCAGGATTTCACCCTACAAgcttcttttcttgttttttttttgttgagtcTTGTTCACTCTTATTCTGTTTGTTCCTGTCACTGGGGTAGGCCAGCTTTATTCGCTGTGTATATCTGGGGCCATATAGCGTACGACTTTGAGCCCCCCTCGACCAGTCCTGATGATTGAAATTGTCATATCAGTGCCAACCTTCTGAGAATGACGGGTCTGGGAAATAGTTCTAGCGACACTAGATCACTATAACGAGAACCTATTAACACTGTCATGTAAGGAACttctacttttttattgttaattaatttattaatttatttattgattgtcTGTCCCACACTTCTTCTTCTCACTGACCCCACTCCCCCTCCGTACTTCGAGCTTCTGTCCTGCTCTCCCAGTTTCTCTCTTCTCCTAGACGTCCTGTTTTAGTTTGTCTCCAGGCTGGGTAATGGAGTCAGTCCTCTCTCACAGGTCCTGTCACACATAGCATGACCCTTCAGCCTTTGTATAAAGAAACGGCTACCTGCTTCACTTAGATAATGTTGAAAAAAATGACTAATAAAACCCACAAAAACggcaaaaagtgcaaaaaaaaaaaagaaaaaagaaacagcagcaacaaaaaGAGAGCATCGTGTAAGCTGGGTTAGGGAGGAAGGGATTTGGGGGGAGGGGTGGGTGTGAGGAAAGTAGACAGTCACAACCAATGATATGGTGCCGTATGGGTGATGGTCATTGGGCTGTGTGTCGTTGTAGAAAGCTGTAGATCCTCTGGTTCTAGAATCTTTACAAGTAGACTTAATCCAAAAAAAGAATGGTTATGACAATAATAAACGATGATAATGAAGATGATAATAACAATATCAATGATGATGATtctgtaatattattaaaagtatatttctTGTGCTTTGTAGCTACAGaacatttctttttctctctccccctcctttttttaaaaaaagaaaaaaaattgcaagGGTTCCCGCGATCCACTCTTAAACCGTTCTTACTGACTTACCGATGTTGATGTTGAACTGTACcaattcttttcttttctttctttttttcttttttttgcctgtTTGCCCTGCATTGAAGTGAATTTACTTAAGCCCAAATAATGGTATATgtatctattttatatttagtttttggaAGAACCACTTTGGCGCGCAGGCCCCGTCCCAGTGCTGGAGAGGGCGGGCCGATGCGTGTGGCTGTACAGATTTCATGCGCTTTCTCTTCctcatgcagttttttttttgttgggttttttggggggaattgtattcaaaataaaaaaacacaccttccAGGTCTGCATAGAAAAGCACAGCTCTCACTCAACACACGTAGATTTGGAACGATGTATCTCTCCTCCCTCTACCTGTCTTCTTAGTTTGACTTGAGAAAgaagacgaaaaaaaaaaatctgaactgtGTATAATGACACAAACCAGTTACGCTtttggattttcttttcttcttcctgCCCTTCCCcttctcttttgttttctttcatcctttcttttttcctctcccaGTGAATGCTTTCTGTGCTGCTTATTTCTCCCTCTTCTTTAGTGAATGGTTGTTCTTTCATGTGGGATGTTCGTGCTGGAAAACCAATCGAATGTAGTGTTTACATTAAAAGCCACAGTTTTCATGACTACAA

Function

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007212 dopamine receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0031821 G protein-coupled serotonin receptor binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216181 lncRNA upstream 55056 19259296 ~ 19262326 (+) True G159480
TU216064 lncRNA upstream 507312 18786541 ~ 18810070 (+) True G159398
TU216054 lncRNA upstream 565228 18738284 ~ 18752154 (+) True G159389
TU216052 lncRNA upstream 580709 18736402 ~ 18736673 (+) True G159388
TU216026 lncRNA upstream 582568 18732483 ~ 18734814 (+) True G159365
TU216298 lncRNA downstream 130624 19563749 ~ 19563966 (+) True G159579
TU216302 lncRNA downstream 152283 19585408 ~ 19585837 (+) True G159583
TU216304 lncRNA downstream 153323 19586448 ~ 19586972 (+) True G159585
XR_002651254.1 lncRNA downstream 174291 19607416 ~ 19665139 (+) True LOC103038177
TU216325 lncRNA downstream 194721 19627846 ~ 19630672 (+) True G159588
XM_007256213.2 mRNA upstream 59348 19253357 ~ 19258034 (+) True nudt21
XM_022679719.1 mRNA upstream 80523 19122919 ~ 19236859 (+) True bcar1
XM_022679718.1 mRNA upstream 80523 19189889 ~ 19236859 (+) False bcar1
XM_007256215.3 mRNA upstream 205705 19076082 ~ 19111677 (+) True cfdp1
XM_022679717.1 mRNA upstream 252226 18997053 ~ 19065156 (+) True carmil2
XM_007256208.3 mRNA downstream 18650 19451775 ~ 19496575 (+) True cbfb
XM_007256209.3 mRNA downstream 18650 19451775 ~ 19493357 (+) False cbfb
XM_015607602.2 mRNA downstream 18650 19451775 ~ 19493346 (+) False cbfb
XM_022679725.1 mRNA downstream 66898 19500023 ~ 19512225 (+) True fan1
XM_022679727.1 mRNA downstream 82482 19515607 ~ 19520553 (+) True LOC111194775
TU215929 other upstream 740945 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 740945 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 740945 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 2128131 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 752391 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 1303473 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 1576177 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 2714719 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 3189714 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile