RNA id: XM_022679727.1


Basic Information

Item Value
RNA id XM_022679727.1
length 1609
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC111194775
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 19515607 ~ 19520553 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCATACTGCTTAGTATGGAAGTACGCAATTTCGGACGCAGCCTATAGTACATCCTTAGGAAAGACGCAGCTCGATCCTACAAGATCTTACAGAAACAGAACTCTAGTGTCAATCATTACGGACATGGACAAAACCTTAAAAACACCAGATGATTCTGTTGAACTGAACTGGCGGGAAGTCATTCCTGTCGGTGCAGGCCTGGAGAACAAGGGTAACATCTGCTACGTCAACTCCGTTCTCCAGTGCCTTACCTACACGCCTCCCCTGACCAACTATCTCCTGTATGGAGAACATTCCAAAACATGTCGGGGATATGCAGTTTGCATGATGTGCGCAATGGAAGAACACGTCAAGCAGGTGTTCTGTAACCCAGGCCGCGTCATTTACCCTGAAGCTATGCTGAACTTGAGTGGAGGGCGGTTTAAGTCTGGGTTCATGCATGGTGCACGCAGGTACCTTCAATTCACCCTGAAGGCCCTGCATCAGAGCTACCTGAATAGATGCAGGCTGAATGGACAGTCAGTGGGCACATCCCTGGTGCAGCAGATCTTTCACGGCTATCTACAAGTTACAACCATATGTGGGGAATGCTGCGGCAGAGTCTCTCAGAGGTATAAACTGTTCCAGATCCTCGATCTGGAAATCAAGAAAATGGATAGCATTCGGCAGGCCCTCACACAGCGCTTTCAGGCCCTAACACAGGGCTTCCAGGCCCAGCTAATCAGTTCAAAATCCTGCGACTGCTGCTGCAAAAGCTGTAAAACTGAGGCAATCCAGGATCTCCCTACAGCATTGGTCATCAGCCTAAACCGTTCTGATGGTGGTAAGAAGATTACAAAGTTTGTGAGCTATCCAGAGACTCTGGACATGAGCCCCTTCATGTCCCAGTCCAGTGGAGCACCGGAGATCTACAATTTGTATGCTGTGCTGGTCCATTCTGGCAGCTCCAACAGAGTTGGACACTTCTACAGCCACGTCAAAGCCAGTGATGGAAAGTGGTACTTGATGAACGACATATCGGTGTCCAAGAGTCAAAGTTCTCTCAAACAGAAGGCATATATTCTGTTCTACATCAGGTCACCAAACCCAGCTGATGTGAAGAACAGTCCAGAACCAACTTCCTCAAACACAGGAGCAGCTTAATCCTGTTTTCTCAGATCCCAAAAATGCTGGGGTGGGTTTTGAGTCTCATCAAAGGATTACCCCCAGGATAAGTACTCTGGACAGAAACAAATTCAGACTACTTATGTCCAGAAACAAGCTTGGACTGCGTTTGTTTAAGAGAGCTCATCtaagtgaaaaagtatttatttctgAGCAATGTCTCCATTAggtaaataaactataaactcaCAATACACAAAACACTGACTTGCCAATAACACAGGAACTTGTcctataatttttttcccatgtGCCATAGGAACACTAATCTGACCTGAGGGATATGTGTATAGGGCCTCCTGCATTCTTActgtattcccagtacacacaagataacacctcaccacTTATACATGTGTGGGCTAGATTAAGGCCTATAAATAAGCTTTACCTAGGGTGGTCTAGAAGTAAACCTacctcatctcatctcatctcatctcatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216181 lncRNA upstream 253281 19259296 ~ 19262326 (+) True G159480
TU216064 lncRNA upstream 705537 18786541 ~ 18810070 (+) True G159398
TU216054 lncRNA upstream 763453 18738284 ~ 18752154 (+) True G159389
TU216052 lncRNA upstream 778934 18736402 ~ 18736673 (+) True G159388
TU216026 lncRNA upstream 780793 18732483 ~ 18734814 (+) True G159365
TU216298 lncRNA downstream 43196 19563749 ~ 19563966 (+) True G159579
TU216302 lncRNA downstream 64855 19585408 ~ 19585837 (+) True G159583
TU216304 lncRNA downstream 65895 19586448 ~ 19586972 (+) True G159585
XR_002651254.1 lncRNA downstream 86863 19607416 ~ 19665139 (+) True LOC103038177
TU216325 lncRNA downstream 107293 19627846 ~ 19630672 (+) True G159588
XM_022679725.1 mRNA upstream 3382 19500023 ~ 19512225 (+) True fan1
XM_007256208.3 mRNA upstream 19032 19451775 ~ 19496575 (+) True cbfb
XM_007256209.3 mRNA upstream 22250 19451775 ~ 19493357 (+) False cbfb
XM_015607602.2 mRNA upstream 22261 19451775 ~ 19493346 (+) False cbfb
XM_022679724.1 mRNA upstream 82482 19317378 ~ 19433125 (+) True gnao1
XM_022679732.1 mRNA downstream 146071 19666624 ~ 19772127 (+) True mef2a
XM_022679729.1 mRNA downstream 146071 19666624 ~ 19772127 (+) False mef2a
XM_022679731.1 mRNA downstream 146071 19666624 ~ 19772127 (+) False mef2a
XM_022679728.1 mRNA downstream 146071 19666624 ~ 19772127 (+) False mef2a
XM_022679730.1 mRNA downstream 146071 19666624 ~ 19772127 (+) False mef2a
TU215929 other upstream 939170 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 939170 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 939170 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 2326356 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 664963 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 1216045 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 1488749 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 2627291 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 3102286 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile