RNA id: XM_022679729.1


Basic Information

Item Value
RNA id XM_022679729.1
length 6089
RNA type mRNA
GC content 0.43
exon number 9
gene id mef2a
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 19666624 ~ 19772127 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggcagagagagagagaaaaagtgagagagatagagagagtgagagaggaagacgAGAGAAGAGGAAGGTGGTGTACAATGTGCTAGTGGAGCGGAGGAGGACAAGCGCAGGTGTTTTTCTGATATTCTCGGGGTGTCAGAGAGACCGAAGAGGACGTCAAGATGGGACGGAAGAAGATCCAGATCACACGGATTATGGACGAAAGGAACCGGCAGGTCACCTTTACAAAGAGGAAGTTCGGCTTGATGAAAAAGGCCTATGAGCTGAGCGTCCTGTGCGACTGCGAGATCGCCCTGATCATATTCAACAGCTCCAACAAGCTCTTTCAGTATGCCAGCACCGACATGGACAAAGTCCTGCTCAAATACACAGAGTACAACGAGCCGCACGAGAGCAGGACCAACTCCGACATCGTGGAGAAATTAAGAACCAAAGGCCATAGTGACTGTGCCAGTCCCGATCCGGACGACTGTTTTGGCCACAGTCCCCTCATGGATGACCGTTTCAGCAAACTAAACGAAGAGAGTGATTTAATATACAAGCGCTCTGCTCCCACAGCCTTGCCCCAGCAGAATTTCTCCATGCATGTGGCGGTGCCGGTGACGAACCCCAACGCCATGTCCTACAACCCGGGAGGCTCTCTGAGCGGTCAGGGTCTGTCAGCTGCCGCCGCCTCTCTGACTGACGGCTCCATGCTGTCCCCTCCCCAGGGCTCCCTCCACAGAAACGTGCTGTCCACTGGTGGCCCCCACAGGCCGCCCAGCACAGGCAGTGCAGGAAATGGCTTTGTCAACCCCAGGGGCTCGCCGGGGCTTCTGGGAACTCCAAGCGGGAACGGACTGGGGAAGGTCATGCCCACGAAATCTCCACCGCCGCCAGGGGGCAACATGGGCATCGGCGGCCGCAAGCCAGACCTGAGAGTGGTCATACCCCCGTCCAGTAAAAGCATGATGCCTCCACTGtcggaggaggaggagatggagTTGAATACCCAGAGGATAAGCAGCTCCCAGTCCACCCAGCCTCTGGCCACCCCGGTGGTGTCTGTCACCACCCCGAGTCTACCACCACAAGGCCTGGTGTACTCAGGCATGCCTACTGCCTACAACACTGAATATTCCCTGAGCAGTGCTGAGATCTCCTCTCTGCAAGGTTTCGGTTCTCCAGGGCTCTCGCTGGGCTCCATGTCGGCATGGCAACAGCATCAACTGGGCCAGGCAGCTCTCAGCTCGCTGGTGGGTGGTGGTCACGTACCTCAGGGCTCCAACCTCTCCATCAACACCAGCCAGAATATCAACATCAAATCGGAGCCCATCTCACCTCCTCGTGAACGAGTCACCCCGTCCGGCTTCCCCCCTCAGCAGCAGCCTCAGCCCCCCGCCGGCCGGCCGGACATGGGCCGCTCGCCCGTGGACAGCCTcagctcctcctgctcctcGTACGACGGCAGCGACCGCGAGGACCACCGGCCCGACTTCCACTCGCCACCGCTGGGTCTGGGACGGCCCCCTGCACCGGGAGCCGATGAGCGCCAGAGCCCGTCTGTAAAGCGCATGCGGATGGACACCTgggtcacataaaaaaaaatgacccgGGCGGCCCGAGCTTTGGTCTACCACCCGGCAAGCGGGccacgcagagagagagagagaaagagaggccaCAGCAGGAAGGGTTCTTAatgttattattctattattattatttaactttgttttttttttttgtttgtttcggAAGGAAGCTGAAGGAAATTCAAAGATGTCCTGACATATCGAAATTAACGTGGTGCAACTaagcagggagagagaaaatgggCCGTTTACTCGGACAGGTTCAGGCGTTATCAGGTACTTGATGCAGTGCAGATTTTTAGCGAGAGTTCAGTGTTTAagtcaaaagaaaagaaagccgTGAATTGATACATTTTAGGTTACTGTAGTCACTGGTCCGGTTTGGCACTTGTAGTagctgtttttttgctgttgaaTTTGCAGGTTTTAAACAATCGGAGCAAGTTTAAAGCCTTGCTTTCTGTCTGAAGGCTATTGCCTGCTGGCCTCTTGACTTTAAATCTTCTATCTTTACACACCCCTTAGAAAGTTCAAGTCATGTGTTAACTCGTTCAAGAattaagatttttgttttttggtttacaAAGGGAAGTACATGTCTAAAACGGGATCACCTCTCTTCTAAAAATGAGCATATTAGCTTTTAGCTACATCATAACATAGGAACGGAACACCACAGACACATCCAACATGtcttttaatttgtgtttgatttgtttgtttagacACAAACCACAAAATGATGTACAGTGTAGtgctgatacactgattttatttgttggtgttttttattttgaagaaaggaaaatggaaaatgagTAAAACATTAGCCCAGTTGATCTGGAGACAGGAGTCCTCAATTTAATGCAGCTCAAACAAATGGTAAAATAAGCCAAAGCCTGTATGTTAATTCCTGTTTTGTTGTAGGTTTGGAAATTCTCATTTCTCTCACACTATCCATTTCATTGTAGTTCTGTcataatgtatttgttaagaactatgaaaatatataaatatatataaatatacacatgcAAAGCTGATCTTGAAACAATATCTAAAGCCATGAACACTTGCTGTTCTGTTTGTAAATTAAAGATTTGagccaaacttttttttttttcttttttgttatgtatATAGCAACTttaatatatatcactttcgGTGTAAGTACGTATGTATTGTAACTTCACCAgattgaagaaaaaaagtatatttttgtgGATTACTGCCAGGTTTACAAGGCGAGATCCTTACTAAGTAGAGTATTCACTGGTTAATATTTACTATTTTGTTAACTATACTGTACTTTCTTCAGATCTGACTTATTACTGCTAATAAtaatcaaagtgttttttatttgaatgaaggtcatttttttcctgttctttactttctttgattttgggTCGTTTTCCCTTTAATGATGGTGAATGTCTGTCCTCAAGAAATTGTAACAACAGTGCTGtaagtttaaaactttttttttttttttgattttgtaCAAGGAAAATTGTCACATTAAGGAAAAggaggaatgtttttttttttttcttcctccttttcacTTTACCAATCACACGGATCACAGAAGGGGTCGGGCCAGCGGCCGCTGAACACACTgcctaaagaaaataaaagcaagGACCCATTTCAAACTTTATCCATTTGAACCTCCAATCAAAGACACATATCTGTTCTGAATTGattttcagacttttttttttcctcattttttggATTAACTGATTGGAATTACACTCTCACTCTCCTTTCaatcaaaaaagagaaaaccctCTTCTAAGGCACTTAATGCTCCATGTTATTACCCACGTACTGTAAATATTAGCCCATAACCTTGTCAATCCTTATACATACTATGTACAGAACACACTATTttcccctcccattttttttttggtgaatcGGCTCTGGGGGAGGGGGTTGGGTGCGGGGTGGTGATATCCGATTCTCCGAGGCATCAAATCGCTCTGTTAGTGCTGGATATACCATGACGGGGATGTATGTGCGTTTTTGTGTGCGTTCTGCATCTCCACGCTGATGCTCTTCTCGTctacgctttttttttttcttacgcagcaacagcagcagcagaagcagctgcGACCAGCACACGCGCGCTCACACACCTCACTGCCCAACTCCAGGCAAATTCTGGGGGCGTGGCAGAGTGTCAGGGGGAATTCAGCAGCAAAAAGACAAACGCTCGACCGCTAGACAATGCAAACCCATCTCTCTGCTGGATTGTACACGTTCGTATGTTCGGGTTCGCCTTTCggggggataaaaaaaaaaaaaaaagaaaaaaccttaaaaagagGCTCCCTCTCTTTACATTTGCTATCTATTTGTCACCTACCTTCACTTGGGGTGTTCACACCGAGTTTTAGATACCTCCCTGCCCTCACAGGCACCATAGCAGCTGGCAATAAGCTCCTGTTGATCTATGCAGTCCTCAAAGCAACACACAGCCCAGCATACGGGGCCACTGAGAAGGCTCAGCACCACAGCGTCCACACTGATATGACCACTGAGGAAAAAACAATCTGAAGaggagaaaaatataaatatatacagtattttgcagAGGTTTTAGGCACATATGAGAATATTTATTACTGGCAGTAATagtttcttttctctgttaaacAGCAAAATTAGTATAGACACAAATAAGATTTATACAGAAAACAGTGTTCACTAAACATCTGCAAAGCTTTCCTTTAGAGAGAGTCtggtattatttatatttatcatcACCCAGCACAATTCAGTTTAATGTTGAGTTTAATGCTATTACATTAGGTGAGCTGATGATGGAATTAAAAACACATCAGTGTCCTGGCTGGAGAAACACACGAGAAATCCTGCTTCCTGGAACTGAAGCTTTGtacttaaaactttacaacaacaacaaaaaaaaacattttacttacttttttgtttaattgcaTCCATTTAATTCTTAATGTGATTTGAAGTTTTGCAAGCAAAAACAGTATCTTACTGCTGAGAGAAATAGAAGTAAATTATGCATTCAGGTGCCCACACCTCCTGTGCAGTACTGTATTTACATCATACATTAGCTACAGATCAGTCAATCATACACCCATTCATAACGTTGCCTAGCATACAAACATGCTCAGTATTCGAGCAGTTGAGAAAAAACGACTGTTAAAACCTTAATCCCTTAAGTGCTTGCATCTAAAATAGGCCCATGTTTTATTGGCTCTTCTATAAGTACCACAGAAAGCCATTTAAACTCCTTTAGTCACCTTAATACAAAAGAGCCCTTTGGTTTATAGCTTTCGCTATCAACCGTCTCTCACCGATTTAATCACTTAATGCAGGAATGAACACGTGTGACTGAAAGGAGCTGCAAGTATGCAAGTTCATTAAAAGTCCATATTTTTATGATGATGTCCATCATGAGTGTATAAACACAATCAACGCCTTCAGGGTAGACAAGCAATAATGCCATTGCAGCGCTATGCACTGCAGGGTGGAGTAATCACATGCAGGGCACTCaaactgcaatgcacacacatacacacacacacacatgtatacacacactaGCTCATGATTAGCAATCAGGGAATTTCTAGAGTTTCTCTCTTGTGCACAGTTAGAGCCTTATTCCAAAGAGTAGTTGGTGTTCTAAATCAAGCTTGAAAATCTCATCAGCATCAAATTCATCCccaatgaaaaaacaacaaacaaacaaaaaacaaaaataaaaaagaggccTAGCCACAGTCACATCCTGATTATCacacctccccccccccccatttgccccaacaaacacacactaaatacataGGAAATCTAAAGGGAGGGAGTCGCTAGTTTCGATCCGAGCGTCGCTTGCGGCACCACATAATGACCTGAATGTGAAACGAAGGgtttatataagaaaaaaaaatgggattcTTTGTAGAGAACTTTTCTTCACTTTGCTGTGCAAGAGTACAACGCTTTGCTTTACGGCTTTTCTAAAAACAGAACTATGTATTTGGTAATTGTTTGTAGTTTCTAGTTCACTTCAACAAGCTGTTTCGCGGTTTGAGCGCTCAAACCGTTTGGCGGCACAAGCTGGACTTTGTTGCCatgaatgaaattaaatgtttcagataaaatggaagagaaaaaaaaaacaagacaagagaAAGTCAAGAGaataattttaagttaatttgCATTATATTTCCCTTGAATGTGTTGTTTTATCttcattatacaataaatattctAGTGAACTTTTTATTGAATGACTAAGATATTATGCTAGAGATTGTTGTATAAATTTGTATTCTGCATTCACTTAAGTAAAGATATTGGCTTTTACTGTGTAACATAGATTCTCTCGCTTATTCTGTACAAAACTGAAGTGAACAGCTCTCTGAATCTGAGCAGACTTTGTCCACCTGTGAAGTCCCGAATATTAGAAACTGTCcgctttattaaaaacctcAATGTACTCTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651254.1 lncRNA upstream 1485 19607416 ~ 19665139 (+) True LOC103038177
TU216325 lncRNA upstream 35952 19627846 ~ 19630672 (+) True G159588
TU216304 lncRNA upstream 79652 19586448 ~ 19586972 (+) True G159585
TU216302 lncRNA upstream 80787 19585408 ~ 19585837 (+) True G159583
TU216298 lncRNA upstream 102658 19563749 ~ 19563966 (+) True G159579
XR_002651256.1 lncRNA downstream 373575 20145702 ~ 20162076 (+) True LOC111194777
TU216415 lncRNA downstream 433937 20206064 ~ 20207105 (+) True G159663
TU216412 lncRNA downstream 435100 20207227 ~ 20213526 (+) True G159662
TU216429 lncRNA downstream 484380 20256507 ~ 20257213 (+) True G159677
TU216470 lncRNA downstream 676331 20448458 ~ 20448783 (+) True G159705
XM_022679727.1 mRNA upstream 146071 19515607 ~ 19520553 (+) True LOC111194775
XM_022679725.1 mRNA upstream 154399 19500023 ~ 19512225 (+) True fan1
XM_007256208.3 mRNA upstream 170049 19451775 ~ 19496575 (+) True cbfb
XM_022679733.1 mRNA downstream 3212 19775339 ~ 19847558 (+) True LOC103025942
XM_007254464.3 mRNA downstream 894117 20666244 ~ 20674227 (+) True arrdc4
XM_007254465.3 mRNA downstream 894117 20666244 ~ 20674227 (+) False arrdc4
XM_015607162.2 mRNA downstream 973441 20745568 ~ 20751796 (+) True lysmd4
XM_007254471.3 mRNA downstream 1214497 20986624 ~ 21007290 (+) True rgma
TU215929 other upstream 1090187 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 1090187 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 1090187 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 2477373 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 413389 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 964471 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 1237175 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 2375717 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 2850712 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile