RNA id: XM_022679733.1


Basic Information

Item Value
RNA id XM_022679733.1
length 4292
RNA type mRNA
GC content 0.44
exon number 24
gene id LOC103025942
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 19775339 ~ 19847558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacaccccaaaccAGCTTAATGAGACAGACAGAAGCTGAAGCACAGGAGGGACTGGTCATGACTTGCTTAAGGAAACTATAAAGTAGTGTTTTTACCTGGAAATAGaaatagagtaagagaaaaaaaaacctcaactGTTGTTAAAATGGATCCCAAGAAGAATGTTTTATCCAAATTGCGAGATTTTAAACTCTTTaatgtgaagaagaagaagaagactccCTTGAAATACAGGCGGAGTATCTCGGTGCCTGATCTCAGCAGGTCATCACCAGTGATGGCGAACAGATTTGCCCAGATTAAAGCCCCCGACTCCACCGCCGACCTGAGCTTTATCGAAGAAACCTCCAGTGTGGCTTATTCTGATAACCTCTCCGTCACAGACGTGGCTTTTTCAGCCTGgcccacagaccagctccaatgTCCAGACACACCATCCTCAACCAGTTCCAGAGAGCGGCACACCGCACCAGACACACAACCTCTAACCCAGTTACTGCCCCGAAACACTTCTGCAGACAAAGCTTGTTTAATTAACCGATCCCCCTTTCCATCTACACCATCTGCAACCAAGGTTCTGCATCAGTTCACCTTTCCAGACACACCGTCATCAGCCAGGCATACTGTGTGGGACGTGCCACCAACATCAGACTCACCAGCTGTTGTGGATAACCCTACCAATAATGACATGCCTGATAAGAAAGCAGAAAAAGGAGACAGAAAAACCAAATGGTACATCGACGACCAGGACAGTGATTCTGAATCTGACGAGGAATGTTCTGAGCAGGAAATAACAGCAGCGATAGATCTCTTATCTCCAGGAAGTACAGACATGTGCGTTAGTGGATCAGCTGAGGATATAGATGAAGTTCCAAATGAGAGCAGTGACTACGACACCAGCGTctcaggaggagaaaaaaagGTCCACTATGTCCTCACCATCAACTTAAAGGAAGGAAAGAACCTGGTGATCAGAGATCGCACTGGTACCAGTGACCCCTTCGTCAAATTCAAAGTAGACGGCAAGACCGTGTACAAAAGCAAAGTCGTGCACAGAAACTTGAACCCCACCTGGAATGAGTCCTTCTCTTTCCCCATCAGAGACCTGGAGCAGAGCATTTCAGTTCAGGTGTATGACCGCGACCTGAGGTCACATGACTTCATGGGTTCCAACACGATCAGTTTAAGTAAACTGGAGCTGGAAAAAACATGTGAGATAATATTGCCTTTAGAAGATACTAACAGTCCAGAGAACGACATGGGGGTGATTGTCTTAGACGCCTGCGTGGCTGTCTCTGAGGAGCCCGCTAAACGAACTAAGTGGCCATTGAAGAGGAAAGGAAGCTTTAATAAGGGTCAGCCACAGCAGGCACGAGGAGCTGCCACACAGAAGTGCCAGCTTTGGAGCGAAGTGTACACGGTGGTGCTGGTAGAGGGGCAGGACATGCCTGACGGTGGGGAGGGCGACATGTACGTCCTTTTCAGCCTGGGTGAGCAGAGATATCGCAGCAAGAATCTGTGCATTAAGGCCAACCCGCAGTGGAGGGAGAGGTTCGACTTCAACCGTTTTGATGATGGCCAATCAGATAAGTTGATGGTGGAGATTTTCTGCAAGAGGGGCCGAAAACGTGAAGAACGCTGGGGAATGCAAGAATATGACCTTTCAGAACTACACCTCAACAAGAagcactcatacacacacacaatgggtGCAGGAAAGGGCCGGCTGGTGTTCTTGGTCACTCGAACCCCCTGCCCCGGAGCGTCCATCTCTGACCTGCGATCTGCTTTATCAGACATCAGTGAGGAGACGCTGCAGCAATACAGTCTGACGAACACACTGCTGAACCTACAGGATGTTGGGTACCTCCAGGTCAAGGTTGTGAGGGCCACAGACCTTTCCTCCACAGATCTGAATgGTAAAAGTGACCCATTTTGTATGCTGGAGCTTGGAAACAGCAAGCTGCAAACTCAAACCATGTACAAGACCCTCAATCCAGAATGGAGAACAATGCTTACATTTCCAATTAGGGACATCCATGAGGTCTTGGAGCTGAGCGTTTTTGGCGAAGATGGGGACAAATCAGGAAACTTCCTGGGAAAAGTTGCTATTCCTTTGCTGACAGTCTCCAATGGACAGCAGATAACCAGCCTTCTAAAAAAAGAGGATTTGACGGGGCCATCCAAAGGGAGCATCACTCTGGAGATGAATGTTGTCTACAACCCGGTCAGAGCTGCCATTAGAACTTTCAAGCCCAAAGAAAAGAAGTTTGTGGAGGACAACCCAAAGTTCAATAAAAAGCTGTTAGCGCGCAACATTTACCGTGTGAGGAGGATCAGCATGGCTGTGCTGTATACACTGCAGTACATTAATAGCTGCTTTCAGTGGGAGAGCACTCAGAGGAGCGTCACCGCCTTCCTGatcttTGTAGTGATGGTGTGCCACTTCGAGCTCTTCATGCTGcctcttttcctcctcctgctgATTGGCTGGAACTACTTTCACAACACCCCGGGCGCGGGCAGCCACAGTCAGGACCTGGAGAGCATGTCCGTGGCGGAGGACGAAGACGAGGATGAAAAGGAATCGGAGAAAAGAGGCCTGATGGAGAAAATCCATATGGTTCAAGAAATTGTGCTCACGGTCCAGAACGTTCTAGATGAAGTAGCGTGCATAGGAGAAAGAGTAAAGAAcACATTCAACTGGTCAGTGCCCTTCCTGTCCTTCCTGGCCTCTGCAGTCCTGTTCACTGCTACTGCTGCACTCTACTACATCCCTTTCCGCTACATAGTCTTATTATGGGGTGTTCAAAAATTCAGCAAGAAGCTCATCTACCCGAATGCAATCGACAATAACGAACTACTGGATTTCCTCAAGAGGGTCCCGTCTGATGTTCAAAAGGTGCAGTACAGCGAGCTGAGAACGGCTGGCACCCAGAGCGTGCAGAAGAAGAAGCGCTAGCGCCCAGAGCCCCAGCAGAGACTTTCGGGATGAAAGGCGGCGGTTGAAATTGGTGCTCTCTTGTTCAGGCCAGACTGCCCCCCTCTCACTTCCAGGGGCAGTCAAGTGGAGTCCCCTACCTCCTCCTCTGCCCCCATATTGGACCTCGTCTACCCCTTGGGGTGAGGCTGCTGCCAGCCTTTCCCCTGGCTCagagtgtgtatgtttgtgtgtgtgtgcttctcAGTGACTTGTAGGGCAACACAAGGATCTGTTACACATTCacagactgaaacaaacaaaccaaaaatccCACACACTGCTCGTGGTATGTTAAAGCTGCAAGCTTCTGACAAACAACATTCTTTGTTAACATTTGGCCATAGCTGCTaagcaacaattttttttaaacacataaatagaattGTGTGTAGTTAtatgtgtgtacagtatttTCTAATATAGATTATCTCCACATCTATCCAGATACTTTTATAAGCAGATGTTGCTgtcttctgattttttttaaaatatttccatCCATACAGAGACAAAAGCGATTGCATAAGAATGCTAGTATGAAAGGAGATCTCTCATTAAGAAAGTTAtcagcacacaaacaaatatcATAGGTGTAATCCCAAATTACACTAGGCAATGGATTCTAAATCTAAGAtgaacattatatatgctcATATGTAgacatatttattatacagtatatatgtagaAAGTATTGTACTTCTTTTCTGGCCTGTGTAATCAGGTTGAAGCACTTACAAATGTTAGTCAAATTATTGATATGTGACAATGTAACCATTTTATTTGACATAATAGGGGTAAGTGAGGCACAAACATTGGGAATGAAGTTTACATACATGaagttttaataaaagtaacaaaGACAAAAGACATAAGATATAAATACGTTGTGCCATAACAAGTTAAATTGTTacgataagttttttttatatatctcagTTATGTTTTTTACTCatctgctttattattttattcacataCACTATTTACTGTGAGAGATATCCAGGCTTatagatatattatatttatttatatatataaataaatggtgGGAAACACAGTAACAGGTTAATTGGGTAAACTTTTCTCAATGTAAATACAGTAACTACATTCAGACTGAGTATAAATTACTGCTCAAATTCTTGTTTGGAAAGTTTTTTTACACTTTCATTGAATATTATTTATCAGTGTGACATCAACATATCTATGTATGAGTTTTTTGTTCATGTTTAAtcgtgttttattttatttattgtatttttagtaaTGGGAAAGCCTCTGGCGATGTTTCcatatgtttgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651254.1 lncRNA upstream 110200 19607416 ~ 19665139 (+) True LOC103038177
TU216325 lncRNA upstream 144667 19627846 ~ 19630672 (+) True G159588
TU216304 lncRNA upstream 188367 19586448 ~ 19586972 (+) True G159585
TU216302 lncRNA upstream 189502 19585408 ~ 19585837 (+) True G159583
TU216298 lncRNA upstream 211373 19563749 ~ 19563966 (+) True G159579
XR_002651256.1 lncRNA downstream 298144 20145702 ~ 20162076 (+) True LOC111194777
TU216415 lncRNA downstream 358506 20206064 ~ 20207105 (+) True G159663
TU216412 lncRNA downstream 359669 20207227 ~ 20213526 (+) True G159662
TU216429 lncRNA downstream 408949 20256507 ~ 20257213 (+) True G159677
TU216470 lncRNA downstream 600900 20448458 ~ 20448783 (+) True G159705
XM_022679732.1 mRNA upstream 3212 19666624 ~ 19772127 (+) True mef2a
XM_022679729.1 mRNA upstream 3212 19666624 ~ 19772127 (+) False mef2a
XM_022679731.1 mRNA upstream 3212 19666624 ~ 19772127 (+) False mef2a
XM_022679728.1 mRNA upstream 3212 19666624 ~ 19772127 (+) False mef2a
XM_022679730.1 mRNA upstream 3212 19666624 ~ 19772127 (+) False mef2a
XM_007254464.3 mRNA downstream 818686 20666244 ~ 20674227 (+) True arrdc4
XM_007254465.3 mRNA downstream 818686 20666244 ~ 20674227 (+) False arrdc4
XM_015607162.2 mRNA downstream 898010 20745568 ~ 20751796 (+) True lysmd4
XM_007254471.3 mRNA downstream 1139066 20986624 ~ 21007290 (+) True rgma
XM_007254472.3 mRNA downstream 1218511 21066069 ~ 21074573 (+) True fam174b
TU215929 other upstream 1198902 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 1198902 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 1198902 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 2586088 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 337958 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 889040 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 1161744 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 2300286 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 2775281 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile