RNA id: XM_022679757.1


Basic Information

Item Value
RNA id XM_022679757.1
length 1808
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC103030816
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 23060575 ~ 23094876 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cattttgatgtgtcccTGTTTGGCATCGTTTTCCACATTCTGTATACTCTCTGAGCGCGAGGATGCCCCGGAGCTGCCTTTATCACGTGTTGTGGATTTTTCCGAGCCTGTGGGCCACAGTTTTTCTACATGATGGACTAAAAAGTTTGTCACAGTGTGCTGGGCTGTTAATGGATGAGGATAAGTACACATGCTGTGGAGGGACCATACACCAGGGAGCTCATCTGTCCTGCTGTGGAAACTCTGCCTACAACATCCTGAAGAGTTCCTGCTGCCTGAatgagTTAACGCTTGGCTTGAGCCAGTCTGTGTCCCGATGTTGCGGATCACATGCCTACAACCCTCTGAATCAGATTTGCTGTGGGGGACGTGTCCAAATCAGACACAGTGCTCAGACCAAATGCTGTGGTTCAGAGCCGTTTGAGGAGAGGACTCATCTTTGCTGTGGTCCTCTTTCTGGGAAGGTGCTATTACCCAGGAATACCAGTTGTGACCTGTGTTGTGGTACTGAACTGTACAACCCAGTGGAGCAGTGCTGCTGCATTGACCCACATGTCCATGTGATCCCCAGGAATCCCAACAACACTGAATGCTGTTCAAATCCAGGTATATTTTTTCAACTGCCGAGAAGGCGaagaCAATCTAGTGATATTTCTGAAGACCACAGAGTTCTCAACCAGCTTAGAAGCAAGAGAGTTCCAGGCTTATCTCAGTTTACGGATCTGTACTGTGGATCAGAACTGTATGACACAAACATCCATATTTGCTgttcagaaaagctgttctCAAACGAGTACGGCCTTGCACAGTGCTGTGGTGCAGAGGTGTACCAGCTGTCAGAAGTGGGAGCGCTGTGCTGTGATGGACAGCTGTATCGAGACCAGCCGGTCGATGCCATCTGTTCTGGTAAAGCCGCGTACTCTCCGCTCAGCTATACTGTATGTCGGCAACATGCTTACCTACCAACTGGCCAGCAGTGCTGTGGGAATAACACCTTTGACCCTGAAAAAGAGATCTGCTGCAATGAACACAGgCATAAAAGGGTAACGGCGGATATGACCTGCTGTGGTTCTCATGCTTACAGTCCCAGCAGCGGTAAACACAAGTGCTGCTCTGGTCACCTCCACGACCTCGCAAACAAAGAGGAGGTCGGATGCTGCGGCACTCTACTGCTGACCAATAAAACGGAGCAGCGCTGCTGCCACTCAACGGCAAAAACTCTGATCTACGATGCCCAGCCCGGACATTCCTGCTGTGGGCACCTGTATTACAGCCATTCCCTGTGGAGCTGCTGCGCCGGACGACTGATTCCCGAGCCAACAGAGAACAGGACTGGAACACAATCATCAGAAGATTTCACACTTAGAGCGCTGACGGATTATAACTTTTCTGATATCTGCGACCTGCCAGtgaTGTTGGGGAGGGTGAAAAGTGCAACAGTGAAGGACGATCAGCGCTTTGTTCTCCTAGCAAATCCTCTGAAGATTCAAGGGAATAAAGGTGCCGTAATAGTTCTTCAGGGAAACCCTTTTGTAGTCGGCCCCCTGGCCCACTGCAGAACTCCGGTTCTGGAGGAAAACAGGACCTACCTCTGGAGGAAAATCACTGGAAAACAATATAAGCCTCTTTCAGACATTACTGACTTGGCATCTCCTCTTCATTCTATCACAGATTTCTGTAACAGCAGCTATTAGTAGTaggcagaaataaataaatcatattacTGTAGAATCCAGCTGTTTTTTACTGAtatcactgtactgtacttgtaTGTGCATTTGTCACATAAAGTTTTACAAacaattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217052 lncRNA upstream 93984 22965333 ~ 22966591 (+) True G160168
TU217043 lncRNA upstream 112386 22911559 ~ 22948189 (+) True G160160
TU217022 lncRNA upstream 161178 22895055 ~ 22899397 (+) True G160142
TU217017 lncRNA upstream 199959 22857092 ~ 22860616 (+) True G160137
TU217025 lncRNA upstream 212812 22847391 ~ 22847763 (+) True G160144
TU217107 lncRNA downstream 132538 23227414 ~ 23227734 (+) True G160212
TU217109 lncRNA downstream 143855 23238731 ~ 23239091 (+) True G160214
TU217113 lncRNA downstream 157201 23252077 ~ 23252817 (+) True G160216
TU217161 lncRNA downstream 767067 23861943 ~ 23915300 (+) True G160253
TU217235 lncRNA downstream 1025003 24119879 ~ 24120092 (+) True G160308
XM_007235622.2 mRNA upstream 167274 22892472 ~ 22893301 (+) True LOC103027426
XM_022679750.1 mRNA upstream 244177 22813535 ~ 22816398 (+) True LOC103027133
XM_007235620.2 mRNA upstream 323946 22728533 ~ 22736629 (+) True LOC103026853
XM_007235619.3 mRNA upstream 333129 22722720 ~ 22727446 (+) True rnf7
XM_007251005.3 mRNA upstream 668000 22302354 ~ 22392575 (+) True LOC103028656
XM_007231092.2 mRNA downstream 282993 23377869 ~ 23673136 (+) True LOC103026225
XM_022679758.1 mRNA downstream 652866 23747742 ~ 23913263 (+) True LOC103025495
XM_022679759.1 mRNA downstream 652866 23747742 ~ 23913263 (+) False LOC103025495
XM_022679760.1 mRNA downstream 652866 23747742 ~ 23913263 (+) False LOC103025495
XM_007231088.3 mRNA downstream 848817 23943693 ~ 23949888 (+) True LOC103024981
TU217011 other upstream 206494 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 437268 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 907790 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 2048781 21009302 ~ 21011794 (+) True G159748
TU216494 other upstream 2323526 20736598 ~ 20737049 (+) True G159728
TU217233 other downstream 1024253 24119129 ~ 24119825 (+) True G160306
TU217966 other downstream 3654503 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 3810368 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 4014795 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 5527252 28622128 ~ 28624785 (+) True G161292

Expression Profile