RNA id: XM_022679803.1


Basic Information

Item Value
RNA id XM_022679803.1
length 2856
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC103044051
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28180682 ~ 28184907 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAACAATGCTGAAAGGAGAAACAACTAATGCCATTGGTTCGCATCTGTCGTTGGAAAAATTCAAGGCCATCCCCTGTTCATTCTTGTCCTTTATATGCCAATGTGTGCTTTACTACCAATGTGTGGCAGGTATGGCACACCATGCAATTGTGTTCACATGCTGGTTTCTGCTTATTGTGCCTATGTTGTGTCAGTTCATAAACAATCATCAGTGTATCTATCAGGGGGAAGAAAGGAATCAAAATTTCTACCAGGATGGAGATGTAATTGTGGGCGGATTGTTCCCTCTGCACTACACCCCGGTGACAACAGTGTGGTCTTTCCAAAAGAAGCCTGCTCCCACTGAGTACAAATACTTAAATCCACGAGCTCTCAGATGGATGAGCACTATGACCTTTGCTGTGATGGAGATAAACCAGAGAAAAGACCTGTTACCAAACCTGACTCTGGGCTATCACATTCGGGACAGTTCTGATGATATTCCTACGTCTTTGAAAGGGTCACTGCTCCTGGTGAATGGGCAGCCGGACATGAGACAAGGATCCAGCTGTGCAGAAGTACGCAGACAGCCCTCTCCAGTCATTGTGGGAGATGCAGCATCAGGGGTTTCCATGGCTGTGCTGAGAACACTGGGCTCATTCAGTGTGCCTTTGGTGAGTTACTTTGCATCCTGCTCTTGTCTGAGTAACAAGAAAGAGTTTCCTGCATTTATGAGGACGATGCCAAGCGATGAGTTTCAGATTAAAGCCTTAGCAAAGCTGGTCCATTATTACCAGTGGACTTGGGTGGGAGTCATAGGTGTGGAATCGGACTATGCTCGCTTTGCTGTTCAGCTCTTTCTAAAGGAATCAGTCAGATATGATGTGTGCATTGCATATGTGCACTTCTACCCTGTTACTCTGTCCAGAGAAGCACTAAGAGAGCTGTTGGGCATTATTGAGGCCTCTACTGCCACAGTCATACTTAGTTTCTCTGGGGAATTGGAGCTGCAGACCATCCTGAAAGAGTGCAGACGACAAAACATCACCCATCTGCAGTGGATCGCCAGTGAAGCCTGGGCCACTGCAAAGACACTGTGGAGTGATTTCAGTGATATGTTGCAGGGAACGCTGGGATTTGCCATTAGGAAAGCAGAAATCCCAAATCTATACAGCTACCTCAGAGAGCTGAACACCTCCAGTCTtcatgtttctagtttcttagGTGAGTTTTGGGAGGAAACATTCAACTGCCGGATCAATGGGTCTCTAAACACCCATATACACAAAGAAGATGTAAAAAACAGAGGGCCTTGCAGTGGAGAAGAGAGTCTGGATGATGTGTACAATCCCTACACAGATGTGACCCAGCTTAGAGTCAGCTACAATGTGTACAAGGCTGTGTATGTAATAGCTCATGCCTTGCATGATATGAGCACATGTGTTCCCGGAGAGGGCCCTTTTCAGAATGGGACGTGTGGCAGCCTGAATCCCATTCTGCCATGGCAGCTTCTGCGCTACATGAAACGAACAAGCTTCACAACGCTGGGAGAAGATGTCCGCTTTGATGAGAATGGGGACCCTATCGCCTCTTATGATCTGATGAACTGGCAGGTGGCAGAAGATGGCTCTCTTTTGCTGGTCAAGGTGGGGTTCTTTGATGCCTCACTAGAGGAGGACAAAGACCTGGTCATTAATGAATCGATGATTATGTGGCACAGAGGAGACAAGGCACCAGAATCTGTCTGCAGCAAAAGTTGCCTGCCAGGCTCCAGGAAAGCCAGGCGAAAGGGTGAACCCATATGCTGCTTTGACTGCATACCGTGTGGCGAGGGAGAGATTAGCAATCAAACAGACTCAATTGACTGTTTGAGATGTTCAAAGGAGACGTGGCCGAACCAAGCCAGAGACCAGTGCATGCCAAAGACCCTGGAGTATCTGTCCTTTCAGGAGCCCCTGGGAATAGTTCTCTGGGCTGTTTCAACCTTTGGAGCATTTTTAACTGCAACGGTACTTTTCGTGTTCGTGATCTACAGGAAGACCCCCGTCATCAGAGGAAACAACATGGAACTCAGCTTCCTGCTTCTCCTGTTCCTCTGTGCGTGTTTTCTGATTGGTCTGACATTCATTGGGAAGCCCTCTAACTGGCTCTGCCAAATCAGATACACAGCCTTTGGAATCAGTTTTGCTCTTTGTATCGCCTGCATCTTGGCTAAGACAGTAGTGGTTCTGATGGCTTTCAGGGCCACCCTTCCTGGCAGCAATGTCATGAAGTGGTTTGGTCCAGCCCAACAGAGGCTAAGCGTCATACTGTGCTCTTGTGTTCAAGCACTGATCTGCATCATATGGCTAACCACTAAACCTCCTTCTGCTGCCTATAACACTGAGTTTATGAGTGCTACTATAATTGTTGAGTGTAATGTGGGGTCTGAGCTAGGATTCTGGTGTGTGTTGGGATACATTGGCCTTCTGGCTTGCATGTGCTTTTTAATAGCTTTCTTCGCCAGGAAGCTCCCTGATAATTACAATGAAGCAAAATTCATTACATTTAGCATACTCATCTTTTTTGCTGTGTGGATAACTTTCATCCCGGTATATGTGAGCACTCGTGGAAAGTATATGGTTGCTGTGCATGTGTTTGCCATCTTAGCATCTGCTTTTGGTCTCCTTTTGTGTATATTTGCTCCAAAATGCTACATTGTGCTGCTGAGACctgataaaaacagcaaaaaacatatgatgaaaaaatagatatattgtGCTGGACCCCTACtttctttatataaaaataaacataaaattgtTAAATTCTTATGCAGTGTAAAAATTGATTGCAATAAAAATGATCCTTTAAAGGTTTGGTCTGTCCTTTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218351 lncRNA upstream 145487 28030613 ~ 28035195 (+) True LOC111194734
XR_002651201.1 lncRNA upstream 148492 28030859 ~ 28032190 (+) False LOC111194734
TU218353 lncRNA upstream 148498 28031398 ~ 28032184 (+) False LOC111194734
TU218309 lncRNA upstream 287205 27893087 ~ 27893477 (+) True G161129
TU218294 lncRNA upstream 385039 27785032 ~ 27795643 (+) False c18h3orf33
TU218493 lncRNA downstream 181261 28366168 ~ 28394028 (+) False G161243
TU218490 lncRNA downstream 203744 28388651 ~ 28392768 (+) False G161243
TU218491 lncRNA downstream 203744 28388651 ~ 28392768 (+) True G161243
XR_002651280.1 lncRNA downstream 458414 28643321 ~ 28652309 (+) False LOC111194802
XR_002651279.1 lncRNA downstream 463598 28648505 ~ 28652309 (+) True LOC111194802
XM_022679804.1 mRNA upstream 2696 28173610 ~ 28177986 (+) True LOC107196882
XM_022679806.1 mRNA upstream 2696 28173835 ~ 28177986 (+) False LOC107196882
XM_007231561.2 mRNA upstream 102950 28071491 ~ 28077732 (+) True LOC103045576
XM_007231544.3 mRNA upstream 203000 27969058 ~ 27977682 (+) True LOC103040346
XM_022679983.1 mRNA upstream 214992 27805063 ~ 27965690 (+) True plch1
XM_022679808.1 mRNA downstream 843 28185750 ~ 28195714 (+) False LOC111194790
XM_022679807.1 mRNA downstream 6472 28191379 ~ 28195714 (+) True LOC111194790
XM_022679820.1 mRNA downstream 71065 28255972 ~ 28283318 (+) True gpr149
XM_022679985.1 mRNA downstream 115812 28300719 ~ 28386417 (+) True dhx36
XM_007251835.3 mRNA downstream 560789 28745696 ~ 28759007 (+) True fam219b
XR_002651269.1 other upstream 1063471 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 1273055 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 1425369 26749379 ~ 26755313 (+) False LOC103021732
TU217233 other upstream 4060857 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 5326601 22853412 ~ 22854081 (+) True G160134
TU218548 other downstream 437221 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 560789 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 885913 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 2690131 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 2690211 30875118 ~ 30878312 (+) False hmgn2

Expression Profile