RNA id: XM_022679808.1


Basic Information

Item Value
RNA id XM_022679808.1
length 2606
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC111194790
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28185750 ~ 28195714 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGCAGCATTACATAGATGGATCATTGGCCTGTCTCCtgattaatactgtttttttttttgtctcattttgtaACACAATACGAGAAATTTACAGGAAAATACGAATATGTGAAGACTGCGGAAAAGAGGGGTAAAAACTGTAGTATCCAGGCCAAAACAGCTTTAGTGCCCGAGCTCTCAGATGGATGAGGACTATGACCTTTGCTGTAAATGAGATAAACCAGAGAAAAGACCTGTTACCAAACCTGACTCTGGGCTATCACATTCGGGACAGCTGTGATGACATTCCTACATCTTTGAAGGGGTCCCTGGTCCTGGTGAATGGGCAGCCAGAGATTGGTCAGGGTGCCAGCTGTGCAGAAGTACGCAGACAGCCCTCTCCAGTCATTGTGGGAGATGCAGCATCAGGGGTTTCCATGGCTGTGCTGAGAACACTGGGCTCATTCAGTGTGCCTTTGGTGAGTTACTTTGCATCCTGCTCTTGTCTGAGTAACAAGAAGGAGTTCCCTGCATTTATGAGGACGATGCCAAGCGATGAGTTTCAAATTAAAGCCTTAGCAAAGCTGGTCCATTATTACCAGTGGAGCTGGGTGGGAGTCATAGGTGTGGAGTCGGACTATGCTCGCTTTGCCATCCAGCTCTTTCTAAAGGAATCAGCCAGGTATAATGTGTGCCCTGCATATGTACACTTCTACCCTGTTACTCTGTCCAAAGATGCATTGAGAGAGCTGATGCACAATATTCAGGCCTCCACAGCCACAGTCATTCTCAATTTCTCTGGAGAGTCAGAACTGCAAACCATCCTGCAAGAGTGCCGACAACAAAACATCACCCATCTGCAGTGGATTGCCAGTGAAGCCTGGGCCACCTCAAAGGCCTTGTGGGTTGAATTCAGTGATATCCTACAGGGAACACTGGGATTTGCTATACGAAAAGCAGAAATCCCAAATCTATACAGCTACCTCAGAGAGCTGAACACCTCCAATATTCATGCTTATAATTTCCTAACTGAGTTTTGGGAGGAAACATTCAACTGTCAGGTCAATAGGTCCCTAAACACCCATATACACAAAGAGGGTGTGAAGAACAGAGGGCCATGCAGCGGAAGAGAGAGTCTGGATGATGTGTACAGTCCATATGCAGATGTGACCCAGCTTAGAGTCAGCTATAATGTGTACAAGGCTATATATCTAATAGCTCACACCTTGCATGATATGAGCACATGTGTTCCCGGAGAGGGCCCTTTTCAGAATGGGACGTGTGGCAGCCTGAATCCCATTTTGCCATGGCAGCTTCTGAGCTACATGAAACGAACAAGCTTCACAACACTTGGAGAAGATGTTCGCTTTGATGAGAATGGGGACCCTATCGCCTCTTATGATCTGATGAACTGGCAGGTGGCAGAAGATGGCTCTCTTTTGCTGGTCAAGGTGGGGTTTTTTGATGCCTCACTGAAGGAGGACAGAGACCTGGTCATTAATGAATCAGTGATTACATGGCACAGAGAAAACAAGGCACCAGAATCTGTCTGCAGCAAAAGTTGCCTGCCAGGCTCCAGGAAAGCCAGGCGAAAGGGTGAACCCATATGCTGCTTTGACTGCATACCGTGTGGTGAGGGAGAGATTAGCAATCAAACAGACTCAATTGACTGTTTGAGATGTTCAAAGGAGACGTGGCCGAACCAAGCCAGAGACCAGTGCATGCCAAAGACCCTGGAGTACCTGTCCTTTCAGGAGCCCCTGGGAATAGTTCTCTGGGCTGTTTCAACCTTTGGAGCATTTTTAACTGCAGCGGTACTTTTCGTGTTCGTGATCTACAGGAAGACCCCCGTCATCAGAGGAAACAACATGGAACTCAGCTTCCTGCTTCTCCTGTTCCTCTGTGCATGCTTTCTGATTGGTCTGACATTCATTGGGAAGCCCTCTAACTGGCTCTGCCAAATCAGATACACAGCCTTTGGAATCAGTTTTGCTCTTTGTATCGCCTGCATCTTGGCTAAAACTATAGTGGTTCTGATGGCTTTCAGGGCCACCCTTCCTGGCAGCAATGTCATGAAGTGGTTTGGTCCGGCCCAACAGAGGCTAAGTGTCATACTGTGCTCTTGTGTTCAAGCACTGATCTGCATCATATGGCTAACTACTAAACCTCCTTCTGCTGCCTATAACACGGAGTTTATGAGTGCTACTATAATTGTTGAGTGTAATGTGGGGTCTGAGCTAGGATTCTGGTGTGTGTTGGGATACATTGGCCTTTTGGCTTGCATGTGCTTTTTAATAGCTTTCTTTGCCAGGAAGCTCCCTGATAATTACAATGAAGCCAAATTTATCACGTTTAGCATGCTTATATTTTTTGCTGTCTGGATAACTTTCATCCCGGTTTATGTAAGCACCCGTGGGAAGTATATGGTTGCTGTGCATGTGTTTGCAATCTTAGCATCTGCTTTTGGTCTCCTTTTGTGTATATTTGCTCCAAAATGCTACATTGTGCTGCTGAGacctgaaaaaaacagcaaaaaacatatGATGAAAAAATAGTGTTCTGTTAAAACACTGGTTAGTGCACAGATATAATACctatataaacaataaacaatgacTCTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218351 lncRNA upstream 150555 28030613 ~ 28035195 (+) True LOC111194734
XR_002651201.1 lncRNA upstream 153560 28030859 ~ 28032190 (+) False LOC111194734
TU218353 lncRNA upstream 153566 28031398 ~ 28032184 (+) False LOC111194734
TU218309 lncRNA upstream 292273 27893087 ~ 27893477 (+) True G161129
TU218294 lncRNA upstream 390107 27785032 ~ 27795643 (+) False c18h3orf33
TU218493 lncRNA downstream 170454 28366168 ~ 28394028 (+) False G161243
TU218490 lncRNA downstream 192937 28388651 ~ 28392768 (+) False G161243
TU218491 lncRNA downstream 192937 28388651 ~ 28392768 (+) True G161243
XR_002651280.1 lncRNA downstream 447607 28643321 ~ 28652309 (+) False LOC111194802
XR_002651279.1 lncRNA downstream 452791 28648505 ~ 28652309 (+) True LOC111194802
XM_022679803.1 mRNA upstream 843 28180682 ~ 28184907 (+) True LOC103044051
XM_022679804.1 mRNA upstream 7764 28173610 ~ 28177986 (+) True LOC107196882
XM_022679806.1 mRNA upstream 7764 28173835 ~ 28177986 (+) False LOC107196882
XM_007231561.2 mRNA upstream 108018 28071491 ~ 28077732 (+) True LOC103045576
XM_007231544.3 mRNA upstream 208068 27969058 ~ 27977682 (+) True LOC103040346
XM_022679820.1 mRNA downstream 60258 28255972 ~ 28283318 (+) True gpr149
XM_022679985.1 mRNA downstream 105005 28300719 ~ 28386417 (+) True dhx36
XM_007251835.3 mRNA downstream 549982 28745696 ~ 28759007 (+) True fam219b
XM_015606482.2 mRNA downstream 572892 28768606 ~ 28859096 (+) True arid3b
XM_022679823.1 mRNA downstream 759003 28954717 ~ 28969395 (+) True LOC103037946
XR_002651269.1 other upstream 1068539 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 1278123 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 1430437 26749379 ~ 26755313 (+) False LOC103021732
TU217233 other upstream 4065925 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 5331669 22853412 ~ 22854081 (+) True G160134
TU218548 other downstream 426414 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 549982 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 875106 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 2679324 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 2679404 30875118 ~ 30878312 (+) False hmgn2

Expression Profile