RNA id: XM_022679826.1


Basic Information

Item Value
RNA id XM_022679826.1
length 522
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC111194800
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29199449 ~ 29200211 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctaagtttttttaaggagtaatcagtaatcggattactttttcaaagtaactataccatcactgctctAGGCTGTGTCATATATGCTTATCAGTTTAACCCTCTATTGTTTCCTGGGCTTGTAGAGCTGATGTCATGTAGGATTTTCTGGTATGAGAGAGGCAGTCAGACAGCTTGTCTTTCTTAAAGCTTTTctgaattcgttttttttttcgttatgATCAACAGGAAGCCAGGTATGCGCCGGTCGCTGTCGACGTCCAGCAGGGATGAAATTATTCGCTGGTTTAAAGAGGAGCAGACCCTCAGAGTTTGTTTACAGCAAGGCGAGAGTCGAGTTGCCCCCTGGTTTCATGGTATTATTACTCGTGAGGAGGCGGAGGATTTGCTGAAGTCAGGCAGCGCTGGAAGCTTCCTGGTCCGTGTTAGCGAGAGGATCTTTGGATATGTTCTTTCTTACAGAACATAgtctatgactcctgcaagtttgggcaaatttcactgtattgtttattttatatta

Function

GO: NA

KEGG:

id description
ko04024 cAMP signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218582 lncRNA upstream 309205 28889370 ~ 28890244 (+) True G161313
TU218581 lncRNA upstream 310323 28886972 ~ 28889126 (+) True G161312
TU218583 lncRNA upstream 312649 28886442 ~ 28886800 (+) True G161314
TU218566 lncRNA upstream 435406 28668173 ~ 28764043 (+) True G161302
XR_002651280.1 lncRNA upstream 547140 28643321 ~ 28652309 (+) False LOC111194802
TU218700 lncRNA downstream 2142 29202353 ~ 29202589 (+) True G161414
TU218703 lncRNA downstream 7752 29207963 ~ 29208290 (+) True G161417
TU218704 lncRNA downstream 10053 29210264 ~ 29214735 (+) True LOC111194801
XR_002651276.1 lncRNA downstream 10151 29210362 ~ 29212876 (+) False LOC111194801
XR_002651277.1 lncRNA downstream 10157 29210368 ~ 29212876 (+) False LOC111194801
XM_007251840.3 mRNA upstream 40264 29152296 ~ 29159185 (+) True LOC103038575
XM_022679824.1 mRNA upstream 56259 29133628 ~ 29143190 (+) True LOC103023184
XM_022679825.1 mRNA upstream 136310 29018060 ~ 29063139 (+) True LOC103022881
XM_022679823.1 mRNA upstream 230054 28954717 ~ 28969395 (+) True LOC103037946
XM_015606482.2 mRNA upstream 340353 28768606 ~ 28859096 (+) True arid3b
XM_022679827.1 mRNA downstream 19255 29219466 ~ 29307913 (+) True csk
XM_007251842.3 mRNA downstream 170854 29371065 ~ 29391966 (+) True LOC103039106
XM_007251843.3 mRNA downstream 198201 29398412 ~ 29401581 (+) True LOC103039409
XM_022679828.1 mRNA downstream 248939 29449150 ~ 29473681 (+) True LOC103023825
XM_007251847.3 mRNA downstream 276474 29476685 ~ 29486014 (+) True tm2d3
TU218604 other upstream 82654 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 440442 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 574664 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 2082238 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 2291822 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 1674827 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 1674907 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 1674907 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 2868651 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 3036105 32236316 ~ 32295029 (+) True G162032

Expression Profile