RNA id: XM_022679827.1


Basic Information

Item Value
RNA id XM_022679827.1
length 3360
RNA type mRNA
GC content 0.49
exon number 13
gene id csk
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29219466 ~ 29307913 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCATGCGCGTTGGGCGCCTGAGCGGAACGGAGACCATTTCCTCCTGCGCGGGCCTGGGCGGCGGAGTCGGCGGCTTTTCTGGCTTCTCAGGCTGTGGATGTTACCGTGACCGAGCCCTGGTACAGGACTCCGCGCTCAGAATCTCTCCAGCCTGCGTTCCTGAAGAGATATTCGGCGAGCTCTGATGCTACCTGTTACTCTGTAACACCTGTCAGAGGAAATCGCAGCCCCGCCCCCTTCCCTTCCCACACTCAGAATGTCTGGTCTACAGACAGCATGGCCGCAAGGCACAGAGTGTGTGGCTAAGTATAACTTCCAGGGCACAACGGAGCAGGACCTGCCCTTCTGCAAAGGAGACGTTCTCACCATCATTGGAGTCACCAAGGACCCAAACTGGTACAAAGCCAAGAACACAGTAGGCAGGGAGGGAACGATTCCAGCAAACTACGTCCAGAAACGAGAAGGAGTGAAATCAGGAGGCAAACTGAGCTTAATGCCATGGTTTCATGGTAAGATCACGCGGGACCAGGCGGAGCGGCTGCTGTACCCGCCGGAGACGGGTCTGTATCTGGTGCGGGAGAGCACCAACTACCCTGGCGACTACACGCTGTGTGTGAGCTGCGAGGGGAAGGTGGAGCACTATCGCATCATCTACCACAACGGCAAACTCTCCATCGACGAGGAGGAGTTCTTCGAGAACCTCATGCAGCTGGTGGAGcatTACACCAAAGATGCAGACGGACTTTGTACTCGACTGATCAAGCCAAAGTTGATGGAGGGGACGGTAGCAGCCCAGGATGAGTTCTCCAGAAGTGGCTGGGCTCTAAGCAGGAAGGACCTGAAGCTTATACAGACCATCGGCAAAGGAGAGTTTGGAGATGTAATGGTGGGAGACTACAGAGGGACCAAAGTGGCAGTGAAATGTATCAAACACGACGCCACGGCACAAGCCTTCATCGCTGAGGCCTCAGTTATGACGCAGCTGAGGCACAATAACCTGGTGCAGCTGTTGGGAGTGATTGTAGAGGAGAGAGGAAGTCTCTTCATCGTCACTGAATACATGGCCAAGGGCAGTCTAGTGGATTACCTGCGCTCACGAGGACGCACCGTGCTGGGAGGAGATTGCCTGCTCAAATTTTCACTtgATGTGTGTGAAGCTATGGAGTACCTCGAGGTGAATAACTTCGTGCACAGGGATCTCGCAGCTCGGAACGTTCTGGTTTCCGAAGACAACATCGCTAAAGTCAGCGACTTCGGTCTGACCAAGGAAGCTTCGTCCACCCAGGACACGGCCAAGCTGCCTGTTAAATGGACGTCACCGGAGGCACTCAGAGAGAAGaGGTTTTCCACAAAGTCTGACGTGTGGAGTTACGGAGTCTTGCTTTGGGAAATCTACTCTTTTGGACGTGTACCTTACCCAAGAATTCCGCTTAAGGAGGTGGTGCCGCGGGTGGAGAAGGGCTATAAGATGGACGCGCCGGACGGCTGCCCGGCCGTGGTGTACGACCTGATGAAGCAGTGTTGGACCCTGGACTCCGTGATGAGGCCATCGTTCCGGATGCTGCGCGAGAAGCTGCAGCACATCAGAGCTAAAGAACTCTATCTGTGAGCCCAGCGCCAGGGAGGGGGCTTCACCCAGGAGGAGAGGTTGTAGTAGGGAGGTTAGGAGTCGGGTggagcagcagcggcggcggccTCCTGGAAGCAGAACGTCCAGAAAGGTCCAGGATGTGTCCGTCACCAACGAGCAGCGAAGCTTGAGAAGAGGCTCTGGGTTTTTGCTTTCGTTCTCTTTCGGACTTTTATTGGACTGTTGATCTGGACGCACTCGCGATGTGTTTCTGTAGACAGAGGAGGACCTTACTAGACctccttttgtgtgtgtgtgtgtgtgtgtgtgagagagagagtgtgtaagagagaatgaatgtgtgtgggtgtgtgttaaaGCGTCCTGATGATATCTGTTTCTtcagccttttttttgtttgtcatttttcCATGCCAATATCATAGTgttgcctctctctttctctctctctctctctctctctctctctctcttacacacacagtccctccctctctccccccttcctgtctctctccttcctccCACACACTCTCCTTCCCTTTCACTCttgtctttccttttctctcactcgtttttttttttcagcatgacatTAATGGGAGGAAGGCTGGCCTTTTCTCCGTTGTTGTGTCAGGTGCTTTTCTTTATCTGTCTCAGTGACATgctagctttctctctctctctctgtctctctctctctttctccttccttctcttccctatctctctgtctcttactcttTTTTGCACATACACGCTCTCTCAAACTCTcaggctacattcacacagcaggttaaagtggcccaaatctgatttttctcACCAAATCGCAAAAGAAGAAATGCTTCGtgtaaagtttcagtttcatcttttCCAGCATCACTTAAGCGCTATCAAATACCATAGTTTGAGTTCCAGTAAGTAATAGAAGGGCTTGCTGTAAAAAGGACACATTAAGGTTAAAGGaaatggccattttattaggaaCATACAGTGGTTGCGATCCTAATTCCCTAAGTCTTCTAATTAAGTAAGACTACACCCAGGACTGTTACCAGTTTTGAGGTCATTATCCCAACACTGAACCCCTCACTCATTGCTGAcatctattttcttttctccttgatgtaaaaatattaactgACTTCAGCTCTGGCTGTTTAGTCCGAGTCGCATTTTGGTGCCGTGTAATATAAAAGTGGCTCTGACTGGAATTCagtttcagtgtgtttatgctgttcacactgccacacagaTCTGTGCCACACATGATGATATTCCTGCTGTGTGGACGAAGCTTTTGTCTCTCGTTGTATCTCACTTTTTTGCGCTTTTCCCTCTACTGTCATTATTTTCTCTTGCATTCTGTCTCTCACaccctctcattctctttcacactctctcttttgctcttacTCAAgcattttctctctgtctcactgtgGCTTCTGTCTGTACCTCAGATTTCTCTTGTGTTGTGTGGCACGGGTTCTAGGTTCTAGCTACATGCTTATCCTGTGAGTGAGTgtatgtaagagtgtgtgtgtgtgagagagagagagaggcgttCGCTCTGTGCCAAAGTGCCTCCAGATGGCAGGGCTGATGCGTCTCGTTTCCCTTCCGCTGCCacactgattttttgttttgttttgtttgtttgtttgtttttgtttgtttttattctcttttttatcattttttttaacagtcgTCTTTTTTGGTTGTTGTTGATTTGTCTGTTTGCTTATTTGCTGTCTACATC

Function

GO: NA

KEGG:

id description
K05728 CSK; c-src tyrosine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218704 lncRNA upstream 4731 29210264 ~ 29214735 (+) True LOC111194801
XR_002651282.1 lncRNA upstream 5802 28652552 ~ 29213664 (+) True LOC111194803
XR_002651276.1 lncRNA upstream 6590 29210362 ~ 29212876 (+) False LOC111194801
XR_002651277.1 lncRNA upstream 6590 29210368 ~ 29212876 (+) False LOC111194801
TU218703 lncRNA upstream 11176 29207963 ~ 29208290 (+) True G161417
TU218716 lncRNA downstream 25198 29333111 ~ 29354291 (+) True G161425
TU218780 lncRNA downstream 175601 29483514 ~ 29490820 (+) True G161476
TU218789 lncRNA downstream 194207 29502120 ~ 29532246 (+) True G161484
TU218809 lncRNA downstream 312484 29620397 ~ 29639626 (+) True G161502
TU218810 lncRNA downstream 317110 29625023 ~ 29646905 (+) True G161503
XM_022679826.1 mRNA upstream 19255 29199449 ~ 29200211 (+) True LOC111194800
XM_007251840.3 mRNA upstream 60281 29152296 ~ 29159185 (+) True LOC103038575
XM_022679824.1 mRNA upstream 76276 29133628 ~ 29143190 (+) True LOC103023184
XM_022679825.1 mRNA upstream 156327 29018060 ~ 29063139 (+) True LOC103022881
XM_022679823.1 mRNA upstream 250071 28954717 ~ 28969395 (+) True LOC103037946
XM_007251842.3 mRNA downstream 63152 29371065 ~ 29391966 (+) True LOC103039106
XM_007251843.3 mRNA downstream 90499 29398412 ~ 29401581 (+) True LOC103039409
XM_022679828.1 mRNA downstream 141237 29449150 ~ 29473681 (+) True LOC103023825
XM_007251847.3 mRNA downstream 168772 29476685 ~ 29486014 (+) True tm2d3
XM_022679832.1 mRNA downstream 213864 29521777 ~ 29598907 (+) True lrrc49
TU218604 other upstream 102671 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 460459 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 594681 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 2102255 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 2311839 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 1567125 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 1567205 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 1567205 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 2760949 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 2928403 32236316 ~ 32295029 (+) True G162032

Expression Profile