RNA id: XM_022679828.1


Basic Information

Item Value
RNA id XM_022679828.1
length 3675
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC103023825
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29449150 ~ 29473681 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAAGGGGGATTTAAACATGGCGGACCGCATGGCGGCACGTTTAGCCGCTCAGGAGCGGCAGATCGAGGCTCTGGGGCGGGAGATCGGCCGCCTGCGGGACGGGCTGGTTAGCGGGCAGGTCGCCGCGGAGCTGGCGAGCAGCGCTGAGCTGGAGAACCTGCGCAGCGAGAACGAGAAGCTCAGATACCGGCTGATACACCTCCGCCGCGGCCTGCAGGCCGAGCCGGGACCGGGACCGGGACCGGAGCCGCGCCGAGACCCAGAGCCCggtaacaccaccaccaccaacaacaacaacaacagcgtTCAGGAGAAACAGAGGAGCACCAGAGAAACAACCTCCAGAGACACAGCCCAGAACAAGAATGCTGCTCTGCCGAAAACTCCAGATGCCCAAAATGCAGCAGAGAAGAGCAAAAAGAAGGAGAAACCCAAAGGAGAAGCTGGAGCGGgagaaCTAAAGCCTTGGCCGAGCTACATCTCCGAGCGCTTAGAGCTGTACAATCGACTGAAGAAGGAGAGCGACGCCATTCTGGCCAAGCAGGCGGCTAACAGCCAGCCCATTTCAGTCGTCCTGCCTGATGGACAGAAAGTGGAGGCTCAGTCTTGGATCACCACCCCATACCAGCTGGCCTGTGGCATCAGTCAGGGTCTGGCTGATAACTGTGTGATTGCCCGTGTGGACGGTGGCCTGTGGGATCTGGACCGGCCGCTGCAGAAGGACTGTTCACTGGAGCTTTTGCGCTTCGACCATGAAGACGCCCAAGCCgtataCTGGCACTCTAGTGCTCATATCCTGGGTGAAGCTATGGAGCGTTTCTATGGGGGCTGCCTCTGTTACGGGCCACCCATCGAAAACGGCTTTTACTACGACATGTTCCTGGATGAGCAAAAAGGAGTGTCGAGCACTGAGTTTGGAGATTTAGAGACACTTTGTAAGAGCATTATGAAGGATAAACAGCCATTTGAGAGATTGGAGATCAGCAAAGAAACACTACTAGAGATGTTTAAGtataACAAGTTTAAATGTCGTATCCTGAACGAGAAAGTGGAAACTCCAACCACTACTGTTTACAGATGCGGTCCCCTCATTGACCTGTGTCGAGGTCCTCATGTACGTCATACTGGCAAGATTAAGGCACTAAAGATCTACAAGAACTCAGCCACATACTGGGAAGGCCGCTCAGACATGGAGACCCTTCAGCGCATCTACGGCATTTCTTTCCCCGACAGCAAGATGCTGAAGGAGTGGGAGCGCTTTCAGGAGGAGGCCAAGAACCGAGACCACCGCAAAATTGGAAAGGATCAGGAGCTGTTCTTCTTTCATGATCTGAGTCCAGGCAGCTGTTTTTTCCTGCCGCGGGGGGCCTACATCTACAACACTCTCACTGAGTTCATCAGGGAGGAGTATTGGAGGAGAGGATTTCAGGAGGTGGCTTCACCCAACATCTACAACAGTAAGCTGTGGGAGACGTCGGGTCACTGGCAGCACTACAGTGAAAATATGTTCTCCTTCCCTGTGGAACAGGACGTCTTCGCCCTCAAGCCCATGAACTGCCCTGGACACTGTCTGATGTTTGGCCACCGGCCGCGGTCCTGGAGAGAGCTTCCCCTCAGGCTGGCAGATTTTGGTGTGCTGCATCGTAACGAGCTCTCTGGTACACTCACTGGACTCACCAGGGTTCGCCGCTTCCAGCAGGACGATGCTCACATCTTCTGCACTATGGAACAGATTGAGTCAGAGATGAAGGGTTGTCTGGACTTCCTGCGCTGCGTCTATGATGTATTCGGCTTCTCCTTCCAGCTACATCTCTCCACCCGGCCTGAGAAGTTCCTCGGTGACATCGCTGTCTGGAACCAGGCTGAAAAGCAACTTGAAAACAGCTTGAATGAGTTTGGTGAGCCTTGGAAACTAAATCCAGGGGATGGAGCATTTTATGGGCCAAAGATTGACATCAATATTAAAGATGCCATCGGGCGCTATCACCAATGTGCCACCATTCAGCTGGACTTCCAGCTGCCTATTCGATTTGACTTGACATATGTGGGGAAAGATGGAGATGACAAAGCCAGGCCGGTTATTATCCATCGTGCTATTCTGGGCTCAGTAGAGAGGATGATTGCCATTCTTACAGAAAACTATGCAGGAAAATggccaCTGTGGTTATCCCCACGTCAGGTGATGTTAGTGCCTGTTAATCCATCCCTTGAAGAATACGCCAGTAAGGTGTGTAAGCAGTTTGTAGAGGCGGGCTTCATGGCGGACGCAGACCTCGACTCCAGTTGCCTTCTGAACAAGAAAATTCGCAATGCTCAGCTAGCTCAGTACAACTTCATTCTAGTGGTGGGTGAGAAGGAGAAGATGACTAACAGCGTCAACGTGCGCACGAGGGACAACAAGGTCCACGGAGAACTGACTGTGGCGGAGGTTCTGGCCCGGCTTACTCTCCTTAAACAGTCCCGGTGCAGGAATGCAGAGGAAGttttctaaactaaaactctGGCCTGATCTCAGTTTAAAGGAACCAGTAGCTCTCATTCATAGATTGGATAcctaaaagtataaaaataatcatttaatttcAAACAAATTAATATATAGGGCATCTGCAGCATTTGACAATAGTTTTAACACATTTCCTTGTATAAAACGAAATTCTGTTGACTTCAACCTCGCATAGAAAGATCATCTGTTGCTGAGAAAGTAGCTGAAGTCTATGAATAACTATTTGTGtgactatatacagtatatagctgTTACAtcctaatatataaaaaaatgaccaaATATCCTATTTTCGATTTTTGACAGGACTGCTAAATAATCAATTCCACTTTAATCTGAAGATTGTTtagaagcatttctattggtccacacCTCGTAAAATTGACATGatcttggtgtttttttttaaatcatgtaaGAAAATGGTTGAAAATAGAGATACAAAGTTTtattcacacaaaaaatattgtgtgaTCAATATTGTAAGATTCATGGCATTAAACTTCACCAGATACAAGGAAACACATTAAAACTATTGCCCATGGCAATCAACTGTACAGCATAcagtaaatcaaatcaaatgctTAATTAGGGTGAAAAACACTGAAGTAGCTCCTTTTAAAAACCTGTTTATGAAACTGTGAAGGTTCTTTTTCCTGTTTTGAACTGGGATCATGTTATTTAGAGCTTTGCTCAGTTAAGGCAGAAAGGACATGGTAAAACGCAATGCAGAAAGTAATGTTAGATATAGAAAAAGGGACAGACGGAGTTCTGCGGAGGAAATGGCGGCATTAGAAGAAAGCCATTCATGATGGATTTGAGATTGTATGAAATGTCTTTATGTAACAAGGCAGAATAATTTTTCAGTGCATATAAAATCTCTCAGTTCTGTAGGCACGTGGGAAGGCAGGCTGGCAGAGGTGGCGTTTTGGCTGGAGCACTTGTGAAAATGTCTACAAAATGTCTTCACTTTGATGCAGTTTTGTGACATACACTAAATGCTTGCATATAaaagtacatacagtacaatgAACGGTCAGTCTGTAATATTCAAAAATTGTGTTCCAGTAAAGGGAAAAGTTGATGTTACGTGACGATGGGAAGTAAATGTGAAGTAAATAATGTCCTGCTGCTATTTATGAAGAATAAAAGCCTTTTCAAAAACAAA

Function

GO: NA

KEGG:

id description
K01868 TARS, thrS; threonyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218716 lncRNA upstream 94859 29333111 ~ 29354291 (+) True G161425
TU218704 lncRNA upstream 234415 29210264 ~ 29214735 (+) True LOC111194801
XR_002651276.1 lncRNA upstream 236274 29210362 ~ 29212876 (+) False LOC111194801
XR_002651277.1 lncRNA upstream 236274 29210368 ~ 29212876 (+) False LOC111194801
TU218703 lncRNA upstream 240860 29207963 ~ 29208290 (+) True G161417
TU218780 lncRNA downstream 9833 29483514 ~ 29490820 (+) True G161476
TU218789 lncRNA downstream 28439 29502120 ~ 29532246 (+) True G161484
TU218809 lncRNA downstream 146716 29620397 ~ 29639626 (+) True G161502
TU218810 lncRNA downstream 151342 29625023 ~ 29646905 (+) True G161503
TU218816 lncRNA downstream 183009 29656690 ~ 29657488 (+) True G161508
XM_007251843.3 mRNA upstream 47569 29398412 ~ 29401581 (+) True LOC103039409
XM_007251842.3 mRNA upstream 57184 29371065 ~ 29391966 (+) True LOC103039106
XM_022679827.1 mRNA upstream 141237 29219466 ~ 29307913 (+) True csk
XM_022679826.1 mRNA upstream 248939 29199449 ~ 29200211 (+) True LOC111194800
XM_007251840.3 mRNA upstream 289965 29152296 ~ 29159185 (+) True LOC103038575
XM_007251847.3 mRNA downstream 3004 29476685 ~ 29486014 (+) True tm2d3
XM_022679832.1 mRNA downstream 48096 29521777 ~ 29598907 (+) True lrrc49
XM_022679829.1 mRNA downstream 132376 29606057 ~ 29715602 (+) True thsd4
XM_022679830.1 mRNA downstream 132376 29606057 ~ 29715602 (+) False thsd4
XM_007251880.3 mRNA downstream 132376 29606057 ~ 29709112 (+) False thsd4
TU218604 other upstream 332355 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 690143 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 824365 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 2331939 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 2541523 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 1401357 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 1401437 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 1401437 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 2595181 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 2762635 32236316 ~ 32295029 (+) True G162032

Expression Profile