RNA id: XM_022679833.1


Basic Information

Item Value
RNA id XM_022679833.1
length 6514
RNA type mRNA
GC content 0.53
exon number 44
gene id myo5a
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29901316 ~ 30027748 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctcATGGGCACCTCGGTGCACACAAATCATTTTCTCCagccttaacacacacactcacacagagccGCGGCAGAGGAGCGATGAGCGACCCGAGCTGTAGATCAGCGAGCCCGGCGCTGGACTGACTGGAGACTCGGGGAGAAGCGTCAGGCTGGAGAGAGGAGCTCGATCAGAGGCCTGGATGCTCCTTTAACCTACCGAGACtgagctaaacacacacactgacgctTTAATGGCAACAACCACCATGGCCGCGTCCGAGCTCTACACAAAGtATGCTCGAGTGTGGATTCCCGACCCGGAGGAGGTTTGGAGGTCAGCTGAGCTGACGAAGGATTATAAACAGGGAGATGCTCTGCTGCACCTACAGCTGGAGGATGGCACGGATCTGGAACACAAGCTGGACCCAAAGACAAAGAACCTTCCTCACCTGAGGAACCCGGATATCCTGGTGGGAGAAAATGACCTGACGGCTCTGAGTTACTTGCATGAACCGGCCGTGCTGCACAACCTTAAAGTGCGCTTCATCGACTCCAAGCTCATCTACACCTACTgcgGTATTGTGTTGGTGGCCATTAACCCCTATGAGACGCTGCCCATCTATGGCACGGACATCATCAACGCCTACAGCGGCCAGAACATGGGGGACATGGACCCCCATATATTCGCTGTGGCAGAAGAGGCCTACAAACAGATggccagaGATGAAAGGAATCAGTCCATCATCGTGAGCGGAGAGTCCGGTGCAGGAAAGACAGTGTCGGCAAAATATGCGATGCGCTACTTTGCTACAGTCAGCGGCTCGGCCAGCGAGGCAAATGTGGAGGAGAAAGTGCTGGCATCCAATCCCATCATGGAGGCCATAGGAAATGCGAAGACCACCAGGAACGACAACAGCAGTCGCTTCGGGAAGTACATTGAGATTGGATTTGATAAGAAGTATCACATCATCGGGGCTAACATGAGGACGTACCTGCTGGAGAAATCACGTGTTGTGTTTCAGGCGGACGAGGAAAGGAATTACCATATCTTCTACCAGCTCTGTGCCTCCGCCCATCTCCCGGAGTTTAAAGCCCTGAAGCTTGGCGGAGCTAATGATTTCCACTACACCAAGCAGGGCCGGAACCCGGTGATAGACGGAGTGGACGACGCAAAGGAAATGTCCACCACCAGGAATGCCTTTATTCTGCTGGGGATTAATGAATCATATCAGATGGGGCTGTTCCAGGTGTTGGCGGCCATCCTTCACCTTGGAAACGTGGAAGTGAAGGACAGAGATGCAGATAGTAGCATCATACCGCCCAACAACCGCCACTTGACGGTGTTCTGTGAGCTGATGGGAGTGACCTATCAGGACATGTCTCATTGGCTGTGCCACAGAAAGCTGAAGACCGCGACGGAGACGTACATCAAGCCCATCCCCAAACTGCAGGCCATCAACGCCCGGGACGCTTTAGCCAAACATATCTACGCCAAACTCTTCAACTGGATCGTCGACCACGTTAACAAAGCGCTGCACTCCACCGTCAAACAGCACTCCTTCATCGGCGTGCTGGACATATACGGGTTTGAAACCTTTGAGATCAACAGTTTTGAGCAGTTTTGTATCAATTACGCCAATGAAAAGTTACAACAGCAGTTTAACATGCATGTGTTTAAGTTGGAGCAGGAGGAGTACATGAAGGAGCAGATTCCGTGGACTCTGATTGATTTCTATGATAATCAGCCCTGCATTAACCTGATCGAGGCTAAGATGGGCATCCTGGACCTGTTAGATGAGGAATGCAAGaTGCCTAAAGGCTCTGATGATTCCTGGGCTCAGAAGCTGTATAACACTCACCTGAAGACGTGCACGCTGTTTGAGAAGCCGCGCATGTCCAACAAGGCCTTCATCATTCAGCACTTTGCAGACAAGgTGGAATATCAGTGTGATGGCTTTTtggagaaaaacaaagacaCTGTAAATGAAGAGCAGATTCACGTGCTGAAGGCCAGTAAGAAGTTTGACCTGCTGGTGGAGCTCTTCCAGGATGAGGAGAAGGCCACCAGCCCGACCGGGGCCCCTCCTACCACAGGGGGGCGCACTCGCCTCAGCGTCAAACCGGACAAGGGCAAGCCGGGCAAGTCCAGCAAGGAGCACAAGAAGACTGTGGGTCTGCAGTTCCGGAACTCTCTGCAGCTCCTGATGGAGACGCTGAACGCCACCACGCCGCACTACGTCCGCTGTATCAAACCCAATGACTACAAACATGCCTTCACCTTTGACCCGAAGAGGGCGGTGCAGCAGCTCAGGGCGTGTGGTGTGCTGGAGACAATTCGCATCTCCGCTGCAGGTTTCCCATCCAGatGGACCTACCAGGAGTTCTTCAGCCGGTATCGGGTCCTGATGAAGCAGAAGGACGTCCTGGCCGATAAGAAGATGACCTGTAAGAACGTTTTAGAAAAGCTGGTGCAGGATCCGGATAAGTACCAGTTTGGAAAGACGAAGATATTTTTCCGGGCGGGGCAGGTGGCGTACCTGGAGAAGCTCCGGGCAGACAAACTGCGGGCCGCCTGCATTCGTATCCAGAAGACCATCCGCTGCTGGCTGGCCCGCAAGAAGTTCCTGCGCATGAAACGTGCTGCAATTACCATCCAGAGACACGTTCGAGGATACCAGGCCCGATGCTTGGCCACGTTCCTGCGTCGTACGAGAGCTGCCATCATCATCCAGAAGTACCAGCGCATGTATGTGGCCAGAACCATGTACAGACGCAAGCAGGCGGCCGCTCTGGCCATGCAGTGCATCCTGCGGGCTTACATGGCCAGACAGCTGTACAAAGCGcTGCTGCGGGAGCATAAGGCGGTCATTATTCAGAAGATGGTTCGGGGCTGGTTGGCGCGGCAGTGGTATAAGCGCTCTCTGGATGCGCTGGTTTACCTGCAGTGCTGCGTGCGGCGCATGAGGGCCAAGCGCGAGCTGAAGAAGCTGAAGATCGAGGCTCGCTCAGTCGAACACTACAAGAAGCTCAACATCGGCATGGAGAACAAAATCATGCAGCTGCAGCGCAAAGTCGACGAGCAGAATAAGGAGAACCGCACTCTGACGGAGCGTCTGAATGGTTTGGAAGTGGCCCACACTGCGGAGAGCGAGCGTCTGCGCAGGGAGCTGAGCCGGTTACGCTGCGCTGAGGAGGACGCCAAGAACAGTAATAACAGAGTGATCACGCtgcaggaggagctggagcgTCTGCGGGCGGAGCTGCAGAGCACACAGAAGGAGAAGAAGGCCATCGAGGACTGGGCTCAGACCTACCAGGATGAGATGGAAAAGATGATCTCAGAGCTGAAGGATCAGAACAGTCTGCTGAAGAACGAGAAGAACGATTTAAACCGAATAATTCAGGAACAGGGCCAGCAATGGACGGAAAAAATGCAGAGAGCTCTGAAGGAGGAGACGACTCAGCTGGAGAGCGACCTGAACGAGGAACGCTCGCGCTACCAGAACCTTCTCACAGAGCACCTCCGACTGGAGGAGAAATACGACGACCTCAAAGAGGAGATCTCACTCTCTGTgaaCGTCCCCAAACCAGGCCACAGGAGAACAGACTCCACCCACAGCAGCAACGAATCAGAATACACCTACAACTCCGAGTTTGCAGAGTCAGAGGAGGGGTCAAGAGGAATGGAGGACGTGACGAAGCCGTCTCTGGACATGGCTCTGTTCCTGAAGCTGCAGAAGAGAGTGACGGAGCTGGAGCAGGAGAAGCAGGGGCTTCAAAACGAGCTGGATCGCAAAGACGAGCAGTTTCAGCGGGCTAGAACCAGGGACCATGAAGAGCATAAGAAAGCTCGCAGTGCAGAACTGGAATATGAATCTCTCAagcgCCAGGAGCTTGAGTCGGAGAACAAGAAGCTGAAGCATAATCTGAATGATATGCGTCAGTCTCTGATGGGAAACACCGGCGCCGCCTCTGCTGCCCCTGGATCACCTGCCTACAAGGTTCTGCTGGACCAGTTAAACTCCTCCAACGAGGAGCTGGAGGTGCGGAAGGAGGAGGTGCTCATTCTCCGCTCACAACTGGTCAGCCAGAAAGAAGCCATGCAGCACAAGGATGAGAAGgagACCATGACTGAGCCGCTGCATCATGTGGAGGACGTACATAAGCTCACTGATGCTAAAGAGATCTCTCAGGCTTACATGGGCCTCAAGGACACCAACAGATCTCCCAGGTTTCTGCGCAGGCCGCTCGAGGTGAACGAGCTGGTGGATAGGCTGAGATCCCCTCTCCCTGACATGAGTAAGCTGAATGAGGATGGGGAGCTGTGGCTGGTGTATGAAGGCTTAAAGGAGACCAACAgGTTGTTGGAGTCTCAGCTGCAGTCTCAGAGGCGCTCTCATGAGTCAGAGTTGGAGGTATTGCGTGGAGAGCTGCAGAGCGTGAAGGAGGAGAACAATCGACAGCAGCAGCTCCTCGCCCAGAACCTGCAGCTCCCTCCGGAGGCTCGTATAGAGGCCAGTCTGCAGCACGAAATCACTCGACTGACCAACGAGAACCTGGTGAATCCCAATGAGGACCCTAAAGCCTACAGAATCAGCGTTCTGCGGAGGTTGATTgACCTCATGGAGCAGCTGGAGAAGCAGGATAAGACAGTCCGTAAACTGAAGAAGCAGCTCAAAGTGTTTGCAAAGAAGATCAACGACCTGGAagGTGGACAGATTGAGAATGTGTCTCCGGGTCAGATGGCAGATGAGCCCATCCGCCCAGTCAGCATTCCACGCAGAGAGAAGGACTTCCAGGGAATGCTGGAGTACAAGAAAGAGGACGAACTCAAGCTGGTTAAGAACCTCATCCTGGaacTGAAGCCTCGCGGTGTAGCCGTGAATCTGATTCCTGGTTTGCCGGCCTACATCCTCTTCATGTGTCTGAGACATGCTGACTACATTAATGATGACCAGAAGGTCAGAGCActcctcacctccaccatcaaCAGCATCAAGAAGATCCTCAAGaaaaGAGGAGATGACTTTGAGACTGTGTCGTTCTGGTTGGCCAACACCTGCCGCTTTCTGCACTGTCTGAAACAGTACAGCGGAGACGAGcaatTTATGAAGTACAACACCCCTAAGCAGAACGAGCACTGCCTGAGTAATTTTGATCTGGCAGAGTACCGGCAGGTTCTGAGTGATTTGGCCATTCAGATTTATCAGCAGCTCATTAAGTGCATGGAGAACATCCTGCAGCCCATGATcgTCTCCGGTATGCTGGAGCACGAGACAATACAGGGTGTGTCTGGCGTGAAGCCGACGGGTCTGCGGAAGCGGACGTCCAGCATCGCGGATGAAGGGACCTACACACTGGACTCCATCATTAGACAGCTCAACTCCTTCCACTCCATCATGTGTCAGCACGGCACCGACCCCGAGCTCATCAAGCAGGTGGTGAAGCAGCAGTTCTACATCATCGGCGCCGTCACTCTCAACAACCTGCTGCTGAGGAAGGACATGTGCTCGTGGAGCAAGGGCATGCAGATCAGGTATAATGTGAGTCAGCTGGAGGAGTGGCTGAGGGATAAGAACCTGGTGGTGTGTGGAGCGATGGAGACTCTGCAGCCTCTGATCCAGGCCGCTCAGCTGCTGCAGGTGAAGAAGAAGACTGACGAGGATGCAGAGGCTATCTGCTCCATGTGCAACGCTCTTACTACTTCtcagATTGTGAAGGTGCTGAACCTGTACACACCAGTCAATGCATTTGAGGAGAGGGTGTCGGTAACATTCATACGAACCATACAGACTCGTCTTCGGGACCGGAAGGAATCTCCACAGCTTCTGCTGGACACCAAAATAATCTACCCCGTCACTTTCCCCTTCAACCCGTCCCCTCTGGCCCTGGAGACCATCCAGATTCCCGGCAGCCTCAACCTGGCCTTCCTCACTCGTGTGTAGAACCCCGTCAATCACGCCGCCTCGGCCAATCACGtcaggaaaaagaagaaaatgatttaaaaagagAATATCACACCTTCAAAGAATGCAGTGATACAGACTTCATCATATCATGTTACTGATCTGTCTAGAACAGATCAcactcacttctctctctcacacacacacacacacacacacacacacatatacacacacacacaggtacgcACACACACCCCTCTGATGTTGTTCGTCAGACACTGGAATATTAGAAGGAAGTGCTGCAATGGCTCGTGATTCTTCATCTCACTGATAGGAATGTACCATATCGGAGGGGGGAAAAGGGCCGGGGGGGTCACGAAGGGTCACAGTCATTTCTTCCAGTTGGGTTGGTCACGAATTCGTTTTTCAGAACGTACCATGTCTCACTGCAAAGCTATTTATATAAGAGTATGTATTGTGctagattttatttattgctttaacTCATTCTCGCTTCAGATCCTTTCCTCAGAAGTCGTACACTGACTCGCGTGGATGTCCGTTCGCGTATCCGGGTCGATCCACTCTGGAATGGTCAGGaaagtttaaatgaaaaaaaaaaa

Function

GO:

id name namespace
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function

KEGG:

id description
K10357 MYO5; myosin V

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651295.1 lncRNA upstream 27004 29870910 ~ 29874312 (+) True LOC111194812
TU218855 lncRNA upstream 84716 29813621 ~ 29816600 (+) False G161532
TU218858 lncRNA upstream 84716 29813621 ~ 29816600 (+) False G161532
TU218859 lncRNA upstream 84716 29813621 ~ 29816600 (+) False G161532
TU218854 lncRNA upstream 86374 29813621 ~ 29814942 (+) True G161532
XR_002651292.1 lncRNA downstream 3175 30030923 ~ 30033401 (+) True LOC111194809
TU218973 lncRNA downstream 40268 30068016 ~ 30127142 (+) True G161612
TU218981 lncRNA downstream 112967 30140715 ~ 30140944 (+) True G161620
TU218983 lncRNA downstream 134356 30162104 ~ 30167852 (+) True G161622
TU218984 lncRNA downstream 134356 30162104 ~ 30213901 (+) False G161622
XM_022679858.1 mRNA upstream 2887 29889893 ~ 29898429 (+) True LOC103032796
XM_022679843.1 mRNA upstream 16710 29875774 ~ 29884606 (+) True LOC107196975
XM_022679987.1 mRNA upstream 158289 29741061 ~ 29743027 (+) True LOC111194842
XM_022679850.1 mRNA upstream 166644 29729350 ~ 29734672 (+) False LOC111194806
XM_022679849.1 mRNA upstream 166644 29729357 ~ 29734672 (+) True LOC111194806
XM_022679845.1 mRNA downstream 8663 30036411 ~ 30088710 (+) True LOC103042250
XM_022679857.1 mRNA downstream 62551 30090299 ~ 30102977 (+) True LOC103035823
XM_022679847.1 mRNA downstream 325938 30353686 ~ 30414204 (+) True LOC103042463
XM_022679848.1 mRNA downstream 342907 30370655 ~ 30414204 (+) False LOC103042463
XM_022679856.1 mRNA downstream 403699 30431447 ~ 30441876 (+) True lysmd2
TU218604 other upstream 784521 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 1142309 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 1276531 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 2784105 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 2993689 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 847290 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 847370 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 847370 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 2041114 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 2208568 32236316 ~ 32295029 (+) True G162032

Expression Profile