RNA id: XM_022679857.1


Basic Information

Item Value
RNA id XM_022679857.1
length 1543
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC103035823
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30090299 ~ 30102977 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTGGAGAGAGTGGGCGGAGCCTCTGCAGCTGCAAAGGGCCGCCGCTGCTGCTACTCTATTATCCACGGACTGACCACCAGCCTGAGCGGAGCAGCCGGACACCGGGGGGAAGAAAATGTCCTGTTGGTTAAGGAAAGAGACTCTGGCGCTGGCGGAGGACTACATCCGCTTCTGCACCGGGGACCAACGGACGCCCCCCAGCGAGTCGGCCGAGGCCATGCGCCGCCTGGCCAAAGAGATGGAGCGGCAACACCATTCTAAATTCCACTCGCTGTCCCAGAGCTTCCTGACGGCCTGCGGCGCAGACCCCAGCGCGTGCCTCCGGAGCGTCATGGCCGTGCTGGTGGAGGACGGGAAGCTGAACTGGGGCAGAGTTGTGTCGCTGTTTACATTCACAGGCGTTCTGGCCACTGAACTATTCTCTAGAGGAGACGGGCCGGAGTGCTGCAGCAGGTTAGCAGAGACTATAGCTGACTACCTGGGAGCAGAGAACAAAGAAtggctgctggaaaatgaaggCTGGgAGGGATTCTGTAAGTTCGTCCGCAGAGCGGGACATCTAGGTCAAGATTCCTCCATGAAAACAGCACTGTTTGCTGCGGCAGGAGTCGGGATAGCTGGACTGACCTTTCTCCTCGTGCGCTGACCTccttatttattcatataaatatatatttttgtcttccttcctcttgcctttatttctttcttttagccatttaatttcattttcctCTTTTGTCCTGTTTCCTTGTTTTCTATCCTGTTTATGGAGATGGACTAAAATATCTTtgaggaattttttttttttctccagtttttggTTACTTAGTAAACCAAGGACTCAGTTGAATGTTATGCACATTGGTGCCACTAGTCAATCATATtcactctttctatttctctctctctctctctcttctctctctctctctctctctctctctctctctctatctgtctgtgcatatcttttgtgctttttttattttaaaaatgcttctAGGTAGTCATATTTGTCATTATTTCCTTTTAATGTAGATAGTAACAGTAAAAATTGTGGCTTTCTGAGAGAAGACACAAACACAGGTTTAAAACATGATTACTTTTCTTTGATTAGAGCTGATACTCtttgtttcttattattttgagtGGGAAGGGAGGTGCTGCGAAGAGTCTAATTCATTCATCAATAATAAAGATCTGTGgtgaaattaatatattatatttatatgaataaaaagtaaacagCAGCCAGAAGCAtttgatttactgtattttagtgtGTATTCGTTTACATtgatatctgatttttttttttttttttttttttttttgcttttgttgtgAAGGTGCTAATCTGTGTTTCCAGTCTTTATGTAATTTTCCAATTAGTGACCAACTTAAtttgtaaaattgtatttattttccttttaaagaACAAATTGTAACTATTATTAGCAATTATCCTACATTTCACAAAGCATATTTTtgaatctttttatttatttaactcttttaataaaatgttttcataaaAGA

Function

GO:

id name namespace
GO:2001243 negative regulation of intrinsic apoptotic signaling pathway biological_process
GO:0001756 somitogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0051279 regulation of release of sequestered calcium ion into cytosol biological_process
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0007369 gastrulation biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651292.1 lncRNA upstream 56898 30030923 ~ 30033401 (+) True LOC111194809
TU218957 lncRNA upstream 57078 29965301 ~ 30033221 (+) True G161599
XR_002651295.1 lncRNA upstream 215987 29870910 ~ 29874312 (+) True LOC111194812
TU218858 lncRNA upstream 273699 29813621 ~ 29816600 (+) False G161532
TU218981 lncRNA downstream 37738 30140715 ~ 30140944 (+) True G161620
TU218983 lncRNA downstream 59127 30162104 ~ 30167852 (+) True G161622
TU218984 lncRNA downstream 59127 30162104 ~ 30213901 (+) False G161622
TU219044 lncRNA downstream 113525 30216502 ~ 30216804 (+) True G161677
TU219049 lncRNA downstream 148605 30251582 ~ 30252005 (+) True G161682
XM_022679845.1 mRNA upstream 1589 30036411 ~ 30088710 (+) True LOC103042250
XM_022679839.1 mRNA upstream 62551 29901316 ~ 30027748 (+) False myo5a
XM_022679847.1 mRNA downstream 250709 30353686 ~ 30414204 (+) True LOC103042463
XM_022679848.1 mRNA downstream 267678 30370655 ~ 30414204 (+) False LOC103042463
XM_022679856.1 mRNA downstream 328470 30431447 ~ 30441876 (+) True lysmd2
XM_022679851.1 mRNA downstream 558905 30661882 ~ 30672269 (+) True LOC111194807
XM_022679852.1 mRNA downstream 558905 30661882 ~ 30672269 (+) False LOC111194807
TU218604 other upstream 973504 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 1331292 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 1465514 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 2973088 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 3182672 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 772061 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 772141 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 772141 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 1965885 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 2133339 32236316 ~ 32295029 (+) True G162032

Expression Profile