RNA id: XM_022679862.1


Basic Information

Item Value
RNA id XM_022679862.1
length 5835
RNA type mRNA
GC content 0.46
exon number 12
gene id slc9a1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31164038 ~ 31255308 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTATAGTGGAATAACAATGATGCAATTCAAGTTGAATGGGCAGTAGATGGCAGTTTTATACGGGGGATGGCACCCCCTTGCACCCACCCTCAGTCCACAGGGAGGGGACTGGAGTTTTGGGCCTAAAGAGATGATGTCCTTTGAATTGCTCCATTCATGGACAGCAAGGTCATTGATTTGAGACACTCCTTACCACGGGATGGCGCTCTGGGGTCGAAATACACTGCATGATACAGCTGTAGGGAGGGGGGCTCCCTCATAGCTTCTGTCCCATACAGTTCCTTCCTCACGCATCCAAATCTTTCCAAAAGGGTGTGTTTTAAAGCTTGTAACTATTTATTCAGCATCACTCTTACTGCAGCATGGACATATAACGCTCCCTGCTGTCTCTGAAGAGCTCCGTGAAGAGCGTTCTAGTCTTGGAAGGACGTGGCCACGCTTAAAACAGAGAACTCgtgcatttctttttattttaaagattaatattagtattattatcgTTTTATTCCCAACTTAAGGTTAAGCGCGCGGGAAGGCGCGAGCTGCTGTTTGTTGCGAGTCGCGCTAAATTCAAAATCCCAGGAACGTTCTGTCAGATTCTCTGCTGCTGGAAAAAAAGCCGTTGGCGTTTTGaaagtttaaaatttaaaaattaaaaaatatgtattattttcttCCGTTATTTCCGTTAATTTACTCGGGCAAACGGTTAAAAATTCAAATCTGACCCTGAATTTGAAGGTTATCAACCGCTGAGTATTCACCGGGGATATTCACCATCCTCTGCAGGCTTCAGAGTGCGCCTCCTCGGCTTGGGGCACGGACACGCTCGCTCTTCTCCTCGGAGGGCTGGAGCTAAACTTCTTAACCTAACTTACCTACCTCagcttctcctttttttttcacagctttattttttaacttaaaataaatttacctcagctttataaaaaaataaaacaacacacgGACCCCGTATTCAGTTGGACTTGAATGGACGTATTATTTGGTaacgttagttagttagctagcctgCATTTATAACGTTTGTAAGTTTTATAGGTATTTATAGCTAGAAAACTAAGTTTCTAGCCAGGTTAGCTTATCTAACTTAGCTGTTTCCACcataacacacactacataGTAACTAACTTACACACcacatgtgttgttttttttgttttccagtcAGCTCTAGAACTAGTTACTTATCTAGCCAAGCCAAGCTAAAGCTAGattagctaagtagctaaccTAAAGTGCTTAaacttagctaactagcttacaTAGTACCTGGCAAGGGCGTgcctttttctttaaattagcCTGGAAGCTAACTAGACtacgctaagctaagctaagctgccTAATTTGCACCGCGTGACgagacaggcaggcaggcaggctggGTGGCTTGGCTGGCTAGGAAGTAGGTAGGGGCAGCAGcggtagcagcagcagctagcaGCTCTAGTAGCTGCTTGGCTTTGTTCCTTTGGGTTCCTTAAGGTTCCTGAAGGTTCTGCTGGGCTCTATTGTGTTCAGTCCATCTGTCCGACCTCCCAGCCGACTGAAGGTGGATCAGAACCGGCTGCTAACCAAAAACAGAGGAcccaaagagaaaaagaagaagaggataatgatgaagatgatggtggtggtggaaaCTGGAGTTACGTTATTAAGGTTGTAAGTCACCTGTATCTTAAGATTAGTTAGTTATAGTTAACccaagtagattttttttaaaccgaGCTCCAGCATGCCGAGTCCTCGCCGTGCTCTCCCCGCTCCCGGAGCCGTGGTGGACCCGCGGAGGTCGGGGTATCTGCTGGTGGTCTCCGTGGTGGTGCTGGGCTGCTGTCTGCTGCCCCTTGGAGCGGCCAGTACCCCGAACAAGACCCCCCAACCGGGAGCCCCGAAGGAGCAGAACGGGAGCCCGGGACACGGAGGGTCTCATGCCAGCAACTACACCAAGAAGCTTTTCCCGGTTCTGTCCTTCGACTACGGACACGTTAAACCCCCGTTCGTGATATTCCTGTGGATCCTGCTGGCTTCCCTAATGAAATTAGGGTTCCACCTCATACCACGTTTGTCCTCCATCGTCCCCGAGAGCTGTCTTCTGATTGTAGTCGGGCTGCTGATGGGGGGAATCTTCAAACTGGTGGGAGAGACCCCACCCATACTGAGGTCTGACCTCTTCTTCCTCTACCTTCTACCGCCCATCATCCTGGACGCTGGCTATTTCTTACCCATAAGGCCCTTCACCGAGAACCTGGGCACTATTCTGATCTTTGCGGTGGTGGGCACTCTGTGGAACTCCTTCTTTATTGGCGGGCTGTTGTACGGCGTGTGCCAGATAGAGGGCACACTGTCCACGGTGGGCCTGCTGCCCTGCTTGCTGTTCGGAGCCATCATATCAGCGGTGGACCCGGTGGCGGTTCTGGCCGTGTTTGAAGAAATTCACATCAATGAGCTGCTTCATATCCTGGTCTTTGGGGAGTCCCTGCTGAACGATGCTGTGACTGTGGTGCTGTATCACCTGTTTGAGGAGTATGCTGGTGCGGGTGCAGTGACTGTCACGGACGTGTTCCTGGGGATCGTGAGTTTTCTGGTGGTGGCGCTTGGCGGTGTGATGGTGGGCGCGATCTATGGCGTGTTGTCAGCATTCACCTCTCGATTTACTGCTCACACTCGCGTCATCGAGCCGCTGTTCGTCTTCGTCTACAGCTACTTGGCTTATCTCTCAGCTGAAGTGTTCCACCTGTCTGGCATCATGGCTTTGATTGCATGCGGTGCCGTCATGCGACCCTACGTGGAGGCCAACATATCGCACAAGTCCCACACCACCATCAAGTACTTCTTGAAGATGTGGAGCAGCGTGAGCGAGACGCTCATCTTCATCTTCCTGGGCGTGTCTACTGTAGCCGGGGACCACAAGTGGAACTGGACCTTCGTTGTCACCACCATCATCCTCTGTATGGTGGCTCGCGTTCTGGGGGTGATAAGTTTGACATACTTGATCAACAAATTCCGCATTGTGAAACTCACCACCAAGGACCAGTTCATCATCGCCTACGGAGGCCTGCGAGGTGCGATCGCCTTCTCGCTGGGATACCTGCTGGACACGGACCACTTCCCCATGAGGAAAATGTTCCTCACAGCCATCATCACGGTCATCTTCTTCACCGTCTTTGTGCAGGGGATGACCATCCGGCCGCTGGTTGACCTGCTGGCTGTTAAGAAGAAACAGGAGACCAAGCGCTCCATTAACGAGGAGATCCACACCCAGTTTTTGGATCACCTGTTGACGGGTATTGAGGACATATGTGGACACTACGGGCATCACCACTGGAAAGACAAgtTGAATCGTTTCAATAAGAAGTATGTGAAGAAGTGCCTGATAGCAGGGGAACGCTCCAAGGAGCCTCAGCTCATCGCTTTCTACCACAAGATGGAGATGAAGCAGGCCATCGAGCTGGTGGAGAGCGGGGGCGGGGTCAAAGTGCCGTCAGCCATGCCCTCCACTGTCTCTATGCAAAATATCCAACCCAAGAAGCCTCCTCCGGAGAGAGCTCTTCCTCAGATATCAAAAGGCCGAGAGGAGGAGATCCGGAAGATTCTGCGCAACAACCTGCAGAAAACACGCCAGAGACTGCAGTCGTACAACAGGCACACACTGGTGGTTGACCCGTACGAGGACGGCTGGAATGAAATTCTGCTGAAGAGGAAGAAGATGATAGAGCTGGAGAAGAAGATATCACAGATGAGTAATTACCTCACAGTGCCGGCGCCACCACCTGATTCTCCCACCATCGCCAGGGCCAGACTGGCATCCGATCCTCAAGCTTGGAGCATCAAGCCGGCAGCGAACGCCGACACCGTACCATCCATCAAAGTGGACCTGGCCTCGCCTCAGTCCCCCGACTCGGTGAGCACGCTGGATGAGTTCAGCaggaggcagcagcagcagcaggaggaggaggaagggggGCTGATGATGAAGCCTCCGTCTGCAGCGAGGGAAGAGCAGGAGGACGGGAAGGAGCAGCAGCGACTCCAGCGCTGCCTGAGTGACCCGGGTCCTGCTGGaactgaggaagaggaggacgaGCCCTTCCTCCCCTGAGGAGACGAGCAGAGGGAGGGAAGAAGGCACTGACTCTTTCTCTGTTTGTATCATCACTGCAGACCTTCTGAACTGATCACATGACTGAGATTTGTCCTGTTTTCATAAAGATAACGGATCGATGAACTTCACAGTAAGCCAAATTGAGAACTCGCGAAACGGAGAGAGAGGAGCGGAGATGACGGAAATAGCCATTTATTTTCTAGCTTTCTCATTCTTCttgtttttaaaactgaaaaaagaaaagcttgGATGAATTCGGGGAATAGGAAAAGAACTATGCATTACCAAAGGTTCGCACTGTTGTTGTTTCCGACTCGTACTGCGcacatctctttatctctccttattttgccttattttttatttagattaagTTAATTTGATGTGTTGAATCGTCAGATGAATTAAATGAAACGCTTTATGTGGCGTAAAATCGTCGCCCACTGAATTTTATATCAGTAAAAAGGCCTTTTTACACTAAGTACGATTTTTTCAGACGGAAAAAAACTACCTTCACACtaaattttttaaacttttttttttttttttgatagctcttattaaaatccactttttctttatctctgctCACTGTTCACTTCTGCTCTTTTTAAGCCAATTTAAAAATTACACTCATGCATAGGCTGTCAATTTCGGACAAAATTAATATACGTTTTCATTTCATACGTTCATATGTTTTCATGTGTATATTTAGATACCAAGATCTTAAAAAATGGCTCGTCCAATTAATTACACTCAAACACAAAACGAACACATTGAAAATGGCAGCCATATTGTTTATTTGCATGGCTAACCGGCTTGATTAGTGcctattttaatacttttatcaCAAAGTGAACGATTCTTTCACTAATCTGAAGCTCACTGTCCACCTCTGCTCTCTTTTAAGCCGGTTAAAGCATTACACATATTCATAGGCTGTCAATTTTAGACGCTAAGCGTAGGACAAAATTAATATGTGTTCGTTTttcaaaatgtaatatatattttttttgtacttaaaaattTCACCTTTGTGCATTTAATGCATTGCATCACTTGAATTGCTTTatgtggtgaaaaaaaaaaacagcacactgCATTATATCATTTAAAAGGCCCATTCCCACCACTTACGACTCTTAGGAACTAggagctctgattggtcaacTGATTTTAATGCATCCGACCACACAAAAGATCATgcaggcttttttttattaatatcttGTTGAATTTAAATTGCTTTATTGGGTTGCTAAACAATCACTGAGTCACTAAAAGTCATTATTTAAGACCATTTCGGTCTTTTtcagctgaaaaaaaagatgctaaTTTTGCAAACGTAGTGGAATCACTTTAAGTTCTTAGTCTTTTGTGCTACAAGAAATCGGGGCTAGAAAAACTCCTCAGCTCTTCTCATTATCAGTGATGAGCTTAGTGGCAAACACTGGAACTGCTTGATGGAGCCTGTGATGCTGGtaaagatgaaaccgaaacttcacgtgaagcgctGCTCTTCAGATGCAAGTGTAGGATATAGATCATATCAAAACGACAGCGTGAACATCTTATAAAACATCTTACATAGGATTTGGTGAGAAAATTgggatttgggccacttttactgctgtgtgaacataaaTAAGGATGATTTTGTCTGTTTAGGAATGCATAAAATATACCATTCATTTACATTCGT

Function

GO: NA

KEGG:

id description
K05742 SLC9A1, NHE1; solute carrier family 9 (sodium/hydrogen exchanger), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219206 lncRNA upstream 128356 31027988 ~ 31035682 (+) True G161797
XR_001518340.2 lncRNA upstream 248788 30892197 ~ 30915250 (+) False LOC103039351
TU219244 lncRNA downstream 56223 31311531 ~ 31311803 (+) True G161831
TU219251 lncRNA downstream 117669 31372977 ~ 31528197 (+) True G161834
TU219255 lncRNA downstream 120154 31375462 ~ 31518161 (+) True G161835
TU219254 lncRNA downstream 194429 31449737 ~ 31518161 (+) False G161835
TU219267 lncRNA downstream 300121 31555429 ~ 31559544 (+) True G161847
XM_015602154.2 mRNA upstream 180178 30971172 ~ 30983860 (+) True LOC103039032
XM_007236248.3 mRNA upstream 285711 30875065 ~ 30878327 (+) False hmgn2
XM_015602150.2 mRNA upstream 296550 30854558 ~ 30867488 (+) False dhdds
XM_007236249.3 mRNA upstream 296550 30854561 ~ 30867488 (+) False dhdds
XM_022679855.1 mRNA upstream 363814 30798138 ~ 30800224 (+) True LOC111194808
XM_022679863.1 mRNA downstream 125909 31381217 ~ 31514641 (+) True znf385d
XM_022679864.1 mRNA downstream 125909 31381217 ~ 31514641 (+) False znf385d
XM_022679865.1 mRNA downstream 125909 31381217 ~ 31514641 (+) False znf385d
XM_022679866.1 mRNA downstream 329438 31584746 ~ 31605490 (+) True efhb
XM_015601104.2 mRNA downstream 432744 31688052 ~ 31802563 (+) False satb1
XR_002651288.1 other upstream 285711 30875038 ~ 30878327 (+) True hmgn2
TU219178 other upstream 285726 30875118 ~ 30878312 (+) False hmgn2
TU219179 other upstream 285726 30875118 ~ 30878312 (+) False hmgn2
TU218604 other upstream 2047243 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 2405031 28745696 ~ 28759007 (+) False fam219b
TU219503 other downstream 813554 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 981008 32236316 ~ 32295029 (+) True G162032
TU219593 other downstream 1458875 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 5498877 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 6154684 37409992 ~ 37411969 (+) True G163105

Expression Profile