RNA id: XM_022679864.1


Basic Information

Item Value
RNA id XM_022679864.1
length 2042
RNA type mRNA
GC content 0.56
exon number 8
gene id znf385d
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31381217 ~ 31514641 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caccctcgcAGTCGCGCTGAGATCATGGAGCGGCTGGCAGCGCgtgcaggagcagcagcagcagcagtgtgtgtgtggtagccgGGGATAGGAGTGTGTGATGAGCCATGGAGAGCAGCAGCATGTTCCTGGgtaATGTGTGTCAGAGTGGTTTACTCCCTCTGGTTCGGGCTCCTCTCCCAGTGCAGTCGTCTCTGCGCCTCAAGCAGTTCCTCCCCTTTACGCTGGACACCAGCGCACTCAACCTGGTGCCTGGATTCAGCACTATGGACTCGGTTCAGAAAGCTGTGCTACATCACACAATTGGCATCGCCGCTTCcgctaaaaagaaacatgcTTCCTGCAACGTCTGCCAACTGCGATTTAATTCACAGAGCCAAGCGCTGGCCCACTACAAAGGCACTAAGCATGCCAAGAAGCTCAAATCCCTCGATGCCCCCAAGTGCAAGCAGAAAAGCTTGGCGGTGACCAGGGAGAATGGCAACAAGGAACCCTGCAAAAGCCTCTCGCCCCCTGTGCCACTGCAGAACGGCACTGATGGGAAAGAGTGCAGTCCTGTGCTCCCGGCCCCGGTGCCCCCGCCCTCAGTCCAGTCTGGCTCCAGCACTGGTCCAGCCATGGAGACCCAGTCTACCTCAGCAGCGTCTGCAGCATCGGCGGGGGACGAGGGTCCCTGCTTAACACCTGGAGCCCCCCAGCCCACGGAGCAGGAGGCGGAGTCAGAGTCGGAGGGGGAGAGGGCGGAGCCTGCGGAGACGGAGGCGGAGAAAGCCCTGAGGCTCCTCTACTGCTCCCTCTGCAAGGTGGCCGTCAACTCGCCGTCACAACTGGAGGCGCATAACAGTGGCACCAAACACAAGACCATGCTGGAGGCTCGCAATGGCAACGGCTCCATCAAGTCCTTCCCCAGGGCAGGGGTGAAGAGCAAGCTGCCGACGCCCACCGGCTCCACCACCGGCCTCCAGAACAGGACGTTCCACTGTGAGACGTGCGACGTTCACGTCAACTCCGAGACGCAGCTCAAACAGCATATCAGCAGCCGGCGCCACAAAGACAGAGCAGCAGGAAAACCTGCCAAACCCAAGTACAGCCCCTACACCAAGACCCAAAGAGGACCGACCAAACCACAAACGGTAAAGCTGCCCCTGGGTAAGGAACTGTGCCAGCCACTGACGGCTACGATAGTGCCCTCCCACCTGGCAGCCGTCGCCGCGGCAGCCGCCGCGGTAAGCCCCGCCTTCCCTCTGCGTGCCGGCCAAAGCGCCTCCATCTTTCAGACTCAGTCCCTCCCCGCAGCCCTCCTCCGCCCCGCCCCCGGGCCTATTCGGACCGCCCACGCTCCGGTACTGTTCGCTCCCTACTGACCTCTGACCTGTGACCTCTGATACAGTACGTCTGATGCACCGTCTCAGCCTCCGCGGTAACGTGGTCCAGTCGTAACGTGGATCATTGCCTATCTGTCCATCCCGACCACTCGAGCGTCACACCGGGGTCGCACCAGAGACCGAACACCAGAGACGTGCGACGCTATACCGCAATAATTATAAGAGACAAACCAGGTAACTATGCAGCATTGTCATCGCCATGTGACACACTGActctataaatgtatttagggatatattatattgttttttctgtcgttttttgttttttggtttgggTATCGTGTCTCGTTTCTCGTTGCTTCTGAgaaaaagatttttattttttcgtcTGTACGTAAAGAGAAAGAGGCTGAAAGTTGGTTCTACTGCTCTGCTGTTTGCACTTTAAAGCCTCCTTCTCCTTCTGTGGATGTCTTCAGTGCTTTAGGTGGCTAGAACGCATCTCATTCCTCCCTGTATGTGTGTACGGTcttataggttttatatatgtgtgtgtgtgtgtgtgtgtgtgtgtatgagtgtgtgttgacgTGGTGTGAATGGGAAATGGGAAAATAAGAAAGTAAGGCAAGTGGCTTTTCCTCCAAAGTGAAATACTGCTGATTTATTTCCAAGAAAAAAGGACAGAAGTACAGCGGGTACGTGCTACGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219244 lncRNA upstream 69414 31311531 ~ 31311803 (+) True G161831
TU219239 lncRNA upstream 134340 31246081 ~ 31246877 (+) True G161826
TU219231 lncRNA upstream 161034 31219338 ~ 31220183 (+) True G161818
TU219228 lncRNA upstream 181470 31192281 ~ 31199747 (+) True G161816
TU219217 lncRNA upstream 190968 31099568 ~ 31190249 (+) True G161808
TU219267 lncRNA downstream 40788 31555429 ~ 31559544 (+) True G161847
TU219272 lncRNA downstream 56453 31571094 ~ 31573854 (+) True G161849
TU219274 lncRNA downstream 88366 31603007 ~ 31605486 (+) False efhb
TU219485 lncRNA downstream 321585 31836226 ~ 31836672 (+) True G162001
TU219487 lncRNA downstream 357382 31872023 ~ 31872277 (+) True G162003
XM_022679862.1 mRNA upstream 125909 31164038 ~ 31255308 (+) True slc9a1
XM_015602154.2 mRNA upstream 397357 30971172 ~ 30983860 (+) True LOC103039032
XM_007236248.3 mRNA upstream 502890 30875065 ~ 30878327 (+) False hmgn2
XM_015602150.2 mRNA upstream 513729 30854558 ~ 30867488 (+) False dhdds
XM_022679866.1 mRNA downstream 70105 31584746 ~ 31605490 (+) True efhb
XM_015601104.2 mRNA downstream 173411 31688052 ~ 31802563 (+) False satb1
XM_022679867.1 mRNA downstream 179825 31694466 ~ 31802563 (+) False satb1
XM_015601103.2 mRNA downstream 193500 31708141 ~ 31802563 (+) True satb1
XM_022679868.1 mRNA downstream 200271 31714912 ~ 31802563 (+) False satb1
XR_002651288.1 other upstream 502890 30875038 ~ 30878327 (+) True hmgn2
TU219178 other upstream 502905 30875118 ~ 30878312 (+) False hmgn2
TU219179 other upstream 502905 30875118 ~ 30878312 (+) False hmgn2
TU218604 other upstream 2264422 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 2622210 28745696 ~ 28759007 (+) False fam219b
TU219503 other downstream 554221 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 721675 32236316 ~ 32295029 (+) True G162032
TU219593 other downstream 1199542 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 5239544 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 5895351 37409992 ~ 37411969 (+) True G163105

Expression Profile