RNA id: XM_022679879.1


Basic Information

Item Value
RNA id XM_022679879.1
length 2651
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC103039334
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32905654 ~ 32915649 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTTTTACGCCCACTTCGTCCTCAGCAAACGTGGGCCGTTGGCCAAGATTTGGCTAGCGGCCCACTGGGACAAGAAGCTGACCAAAGCCCATGTCTTCGAGTGCAACTTGGAGAGCAGTGTGGAGAGCATCATTTCACCAAAGGTGAAAATGGCTTTGCGTACGTCTGGTCATCTTCTCCTGGGTGTGGTGAGAATCTACCACAGGAAAGCCAAGTACCTGCTTGCTGACTGTAACGAAGCCTTCATTAAGATCAAAATGGCTTTCCGACCAGGTGTTGTGGATCTTCCCGAAGACAATCGGGAGGCTGCCTACAATGCCATCACCTTGCCAGAGGAGTTCCATGACTTTGATCAGCCCCTTCCAGATCTTGATGACATAGATGTAGCACAACAGTTCACTCTGAACCAGAGCCGAGTGGAGGAGATCACCATGAGAGAAGAAGTGGGCAACCTCAGCATCATGGCAGACAATGACTTTGGTGACTTCGGCATGGATGATCGGGAGATCATGAGGGAGGAAAGTGCCTTCGAGGTGGACATCATTCACGGGTCATCTGCCTCCAACCTTTTGCTGGAAGCAGAACCTGGTCCTGCCCACCTTCCTGATAAGTCAACCAACCTTGACTATGATGACTTTGGTGAAAACAACCTGGAGAACAGTGATGGTGGAATACTTGTGGACAAACTTTTGAGCAGCGATGGTGGTGGAGGAATATTTGATGATCCTCCAGCCATCACTGACAGCGTTATGATGCCCCCAGACCACGGAGATGATGACGACGACTTTGATAACTTTTCCCCAGCCGGTGCTCCAGACAGTCCTGATTCTGGCCCTGTGGAGCCTCTACCCAACACCACAGACCAGACCGAACAGACCACGCTGGTGCCTAATGAGGAGGAGGCTTTTGCCCTGGAGCCCATTGACATCACTGtaaaagagACGAAGGctaagaggaagaggaagctgATTGTGGACAGCCTGAAGGAACTCGACAGCAAGACCATCCGCGCTCAGCTGAGCGACTACTCCGATATTGTCACCACGCTGGATCTGGCTCCGCCCACTAAGAAGCTGATGATGTGGAAGGAGACTGGAGGAGTGGAGAAGCTCTTCTCTCTGCCTGCACAGCCTCTCTGGAACAGCAGAATGCTTAAGATGTTCACACGCTGCCTGACCCCGCTGGTACCAGACGAGCTGAGGAAGAGAAGGAAGGGTGGCGAGGCCGACAGCCTGGAGGAGTTCCTGAAGGAGCTTGAGAATCCTGAGGTTCCTCGTGAAGAGCAGATCACACAGAGGAGTGATGTTATCGATCAGACCATTGTGGAGGAGCCCAGCATGCTGCAGGTTTCATCAATCGAGGGCAGCAGAACGGCTCTGGACGAGACTCTGATGCCTCCTCCTTCCAGGCAGCGGGGAGTCAAGCGCAAGTCCCAGGAGGCCGAAGCCGCTCTGCCGCCAATGGGCATCCTCGATCAGTCTCTGCAGCCAATGGAGCAGTCAGTGCTGTCCCAGCAGCTTGATATGCCACAGGTGGATCTGCCACCCGAGGACACCACCAACCTCTCCAGACTCGTCCCTGAGCTGGACCTGCTGGGAGAGAAGAGCAAAGACAAGGACGACAgcgaagaggaggaggagGAAGGAGAGGGTCAAGGAGACCAGGACCAAGAAGAGAGAAGATGGAACAAGAGAACCCAGCAGATGCTGCATGGGCTTCAGcgtGTGGTGGCGAAGACCGGAGCCCAGTCCATCAGCCTGCTGGAGCTGTGcaagaacaacaacaagaaaCAAGCCGCCGCCAAGTTCTACAGTTTCCTGGTCCTGAAGAAACAGCAAGCCGTGGAGCTGTCCCAGTCTGAGCCCTACAGCGACATCATCGCCACGCCGGGACCGCGGTTCCACCTTGTATAGATGCATGTTACTCTCTTTTTAGAAGTtgtatttaacactttttactgttcagttttttttttttttgtacctttttTCAGCTCGTTTCGGACCAATTTTTATGCATTTGAATCAAGATCTGTTTGATCATGCAGAGATTGTCCTCTGTATAGCAGGAAGGTTTGCATGTTGGTCCCCCTTTTGTACCCCTTGTAAGCTCAGTTGAATTTTACGAACCTCACTTCGTCCCGCAGACTGTTGTTTTTATCATCTTTTGGTTTTACCTGATTAGGTTTTACAGTTGAAAAGCAAGTAGAATAGATGTAtacatttttgcctttttgatAATGTCACATTTGACATGATATAAAGGTTTATTTTTGGAAGTTCTGGTGTATTTGAATGATGCAGAACATCATGCTCAACATTTTGTATCTCTCTTTTAATGATGATGGTTATTAAAGGATTATTAAAATGACAGAACCTGGGAATTCTATGCACTTAATTACAACATGGATATCCTTTAAAGCAGGtttaatattttcttaatttgctttattttcAGCTGGTGTTCCTGGATTTCATGATGGTTTTAATAGCATTACGTTTTGTTCAACTCTGTTCCACACCTCAAACTTCcttttaatacaatacaaaatttAACCTGAAATGTTATCATGTCCTTGCCTCTGTAATGTTTACATGATGGACTCTGTTTTATagtaacttttaattaaactttAAGGTCTCCCACTGTA

Function

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007064 mitotic sister chromatid cohesion biological_process
GO:0000228 nuclear chromosome cellular_component
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K06670 SCC1, MCD1, RAD21; cohesin complex subunit SCC1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219594 lncRNA upstream 157943 32648159 ~ 32747711 (+) True G162097
XR_001518293.2 lncRNA upstream 161647 32742054 ~ 32744007 (+) True LOC107196950
TU219592 lncRNA upstream 161917 32741987 ~ 32743737 (+) False LOC107196950
TU219617 lncRNA upstream 166045 32736429 ~ 32739609 (+) True G162111
TU219613 lncRNA upstream 167499 32736429 ~ 32738155 (+) False G162111
TU219788 lncRNA downstream 252068 33167717 ~ 33168084 (+) False G162239
TU219790 lncRNA downstream 252068 33167717 ~ 33168151 (+) True G162239
TU219801 lncRNA downstream 260481 33176130 ~ 33176329 (+) True G162247
TU219804 lncRNA downstream 281316 33196965 ~ 33197176 (+) True G162250
TU219817 lncRNA downstream 337756 33253405 ~ 33253768 (+) True G162255
XM_007233718.3 mRNA upstream 26398 32782074 ~ 32879256 (+) True LOC103040053
XM_007233722.3 mRNA upstream 175803 32721244 ~ 32729851 (+) True LOC103041297
XM_007233723.3 mRNA upstream 204050 32681742 ~ 32701604 (+) True LOC103041596
XM_022679876.1 mRNA upstream 339764 32377101 ~ 32565890 (+) True LOC107196951
XM_022679877.1 mRNA upstream 339764 32377101 ~ 32565890 (+) False LOC107196951
XM_022679881.1 mRNA downstream 2494 32918143 ~ 33043136 (+) True LOC103043655
XM_022679409.1 mRNA downstream 289058 33204707 ~ 33997444 (+) True LOC103027235
XM_022679884.1 mRNA downstream 1155510 34071159 ~ 34092737 (+) True LOC103045871
XM_015600786.2 mRNA downstream 1155510 34071159 ~ 34092737 (+) False LOC103045871
XM_022679885.1 mRNA downstream 1203144 34118793 ~ 34161754 (+) True LOC111194818
TU219593 other upstream 186379 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 610625 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 757464 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 2027342 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 3838536 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 4494343 37409992 ~ 37411969 (+) True G163105

Expression Profile