Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_022679881.1 |
| length | 1255 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 10 |
| gene id | LOC103043655 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035914.1 |
| NCBI id | CM008317.1 |
| chromosome length | 41377133 |
| location | 32918143 ~ 33043136 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0001731 | formation of translation preinitiation complex | biological_process |
| GO:0005852 | eukaryotic translation initiation factor 3 complex | cellular_component |
| GO:0033290 | eukaryotic 48S preinitiation complex | cellular_component |
| GO:0016282 | eukaryotic 43S preinitiation complex | cellular_component |
| GO:0003743 | translation initiation factor activity | molecular_function |
| id | description |
|---|---|
| K03247 | EIF3H; translation initiation factor 3 subunit H |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU219594 | lncRNA | upstream | 170432 | 32648159 ~ 32747711 (+) | True | G162097 |
| XR_001518293.2 | lncRNA | upstream | 174136 | 32742054 ~ 32744007 (+) | True | LOC107196950 |
| TU219592 | lncRNA | upstream | 174406 | 32741987 ~ 32743737 (+) | False | LOC107196950 |
| TU219617 | lncRNA | upstream | 178534 | 32736429 ~ 32739609 (+) | True | G162111 |
| TU219613 | lncRNA | upstream | 179988 | 32736429 ~ 32738155 (+) | False | G162111 |
| TU219788 | lncRNA | downstream | 124581 | 33167717 ~ 33168084 (+) | False | G162239 |
| TU219790 | lncRNA | downstream | 124581 | 33167717 ~ 33168151 (+) | True | G162239 |
| TU219801 | lncRNA | downstream | 132994 | 33176130 ~ 33176329 (+) | True | G162247 |
| TU219804 | lncRNA | downstream | 153829 | 33196965 ~ 33197176 (+) | True | G162250 |
| TU219817 | lncRNA | downstream | 210269 | 33253405 ~ 33253768 (+) | True | G162255 |
| XM_022679879.1 | mRNA | upstream | 2494 | 32905654 ~ 32915649 (+) | True | LOC103039334 |
| XM_022679880.1 | mRNA | upstream | 2494 | 32905654 ~ 32915649 (+) | False | LOC103039334 |
| XM_007233718.3 | mRNA | upstream | 38887 | 32782074 ~ 32879256 (+) | True | LOC103040053 |
| XM_007233722.3 | mRNA | upstream | 188292 | 32721244 ~ 32729851 (+) | True | LOC103041297 |
| XM_007233723.3 | mRNA | upstream | 216539 | 32681742 ~ 32701604 (+) | True | LOC103041596 |
| XM_022679409.1 | mRNA | downstream | 161571 | 33204707 ~ 33997444 (+) | True | LOC103027235 |
| XM_022679884.1 | mRNA | downstream | 1028023 | 34071159 ~ 34092737 (+) | True | LOC103045871 |
| XM_015600786.2 | mRNA | downstream | 1028023 | 34071159 ~ 34092737 (+) | False | LOC103045871 |
| XM_022679885.1 | mRNA | downstream | 1075657 | 34118793 ~ 34161754 (+) | True | LOC111194818 |
| XM_022679886.1 | mRNA | downstream | 1075657 | 34118793 ~ 34161754 (+) | False | LOC111194818 |
| TU219593 | other | upstream | 198868 | 32714183 ~ 32719275 (+) | True | G162096 |
| TU219521 | other | upstream | 623114 | 32236316 ~ 32295029 (+) | True | G162032 |
| TU219503 | other | upstream | 769953 | 32068862 ~ 32148190 (+) | True | G162017 |
| TU219178 | other | upstream | 2039831 | 30875118 ~ 30878312 (+) | False | hmgn2 |
| TU220729 | other | downstream | 3711049 | 36754185 ~ 36754687 (+) | True | G162964 |
| TU220936 | other | downstream | 4366856 | 37409992 ~ 37411969 (+) | True | G163105 |
