RNA id: XM_022679894.1


Basic Information

Item Value
RNA id XM_022679894.1
length 1897
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC103044586
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34319213 ~ 34349880 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATCTCTCCTGTGTATCTGTCAGGCTACGGAGTCGAGGAGGAGAAGTTAGCTGAAAATATGGGAGATAAACGTCTAAACCAGGACTGAGCTGCACTAAATAACCCTGCGAGTGAAGTTTAGAGTTTGTAGAGTCTCTGCTGGCTCAGGGTTTTACTGTTTAGTATCGGGTTTAAACAATAAAGCCAGGCTTCCTCTTCTCGTTTCTCCACTAAACTCAGAGTTTCAGCTACAGCATGCAGATAGCAGTGCTTCCAGACGCAGGCAGGACAGTTTTACAGGCTGTTCAGGACAATCCAGGCTCATATTCCCACAGCAGGCTGGCCTGGAACGACCACAggacaccaccaccaccatccccTTCCTCCTTTAACTCCAGCATTGGGGGTCGAGCAGCAGTCAGCAGGCTGAAGCTGAAGCCCACCCATGGTCTTTGTTCCAGTGGCCCTGTGGAGAAGACCCTGCACCAGGAGAAGCGTGGAGCTTCCTCAGCTGGGGAAGtggaGAAGTTAAAGCCGCAGTCAGCTGGACCTCCACATCAGCAGAACTCCTCGATGGATCTGATAACTGAGCAGTACCTGTGTGGTCAGTGGCCACGAGagcttcatcatcatcatcagcccCAGCGCACCTGCATGACCGATAAAGCCACACAGACCCCTGTTTTTTGGTCAGATGATCTGGAAGGCCTGTCGATACAGAAGCGTTCAGCATCCTGGTCCAGTGCTGAACACCGTGAAGAGATCGCAAAACTGTGTCACCAGCTCAGGAGAAGTGTGCTGGGATTTCATCGAAACAAAGAATCACCAGAATCACCATCACTGTCTTTATGCAGCCAAGTGCAGacTAAACTACCTCCTGCCTCCTCGACCAGCATGAGCGTCACAAAGCCAGCAGTGTGTAGAGTGAGCAGTTATAACGACAGCATTAACCGTGAGCTCGAGAGTGTGTTCCTCAGCGACACCTGCAGGCAGCAAGAAaggGAGTTACAGGATGGGCGCTGTGCTCCGGTTCCTCCTCATCAGAACAGTGATACTCACACACAGAGTAcagatgcacagctttcaatCAGTGACCATCACTGTCCACACCTTTTCCCTTTTGCTGCTGATGCCCCACATGGAACAGAACTCTTCACCAGCAGGTCTGAGTGTGGTGAAGGCTGTGACTATGTAAATGAGAGCAGCTCACCGCTGCCCCCACTGGCCAGTTCCCCCAAACCCAACAACAGCTTCATCTTTAAACGGGTTCCTCCTGAAGGCTGTGAGAAGATCAAGGTCTTTGAGGAGACTTTcTCTTGTAGGTCTAGAGGATTCCCGGTCTTCTCCTGCCCTGACCGGAACAAAGTGAGCTTCATCCCGACCGGCTCTGGACCGTTCTGTCCCGTCAGACAGCCGGGTTCCTCCCTCTGTCCCTCAGACTGTAGACCTGTCTCTCAGAACGCTCAGCCCACAGGGCAGTTAAAACAGACTGGAGGACAGGACGTCCCGCCTTCACACTGCTTCAGCTCATACAGGACTCAACACTactaatcaatcagtcaatcaaccaaccaatcagggACCACGATCAGCAGTGAGGTGTATGGATTTCTCCTAGTGTGTGGATTTCTCATACTTAAGTACTTATAATACTTAAGGAAGCAATGCAGCTACTGTGTTTGAACGGTGAACTGTCTGATATGTCAttatacactgacataccaAATGTCAGTAGATGTGATGGATTCACtagtctgttcacatggacaattctagccagaagctgccAGTCATGATCTTTAACGCTCACTACACTGCGATAGAGCTTAGATTCGGCTCcaaaaatccagcccgacccgATACGCCCtataaactgtttttgtgagcccaagcctgatttaaacctggcatttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220010 lncRNA upstream 97877 34220112 ~ 34221336 (+) True G162408
TU220007 lncRNA upstream 116107 34202903 ~ 34203106 (+) True G162405
TU220004 lncRNA upstream 141986 34170400 ~ 34177227 (+) False G162403
TU220005 lncRNA upstream 147896 34170400 ~ 34171317 (+) True G162403
TU219965 lncRNA upstream 221616 34093913 ~ 34097597 (+) True G162373
TU220050 lncRNA downstream 49354 34399234 ~ 34399448 (+) True G162442
TU220132 lncRNA downstream 151720 34501600 ~ 34517219 (+) True G162505
TU220145 lncRNA downstream 305081 34654961 ~ 34655440 (+) True G162518
TU220162 lncRNA downstream 427327 34777207 ~ 34783691 (+) True G162530
TU220165 lncRNA downstream 442653 34792533 ~ 34792826 (+) True G162533
XM_022679893.1 mRNA upstream 3989 34300018 ~ 34315224 (+) True mios
XM_007242176.3 mRNA upstream 3989 34300018 ~ 34315224 (+) False mios
XM_015604004.2 mRNA upstream 101410 34213886 ~ 34217803 (+) True LOC103027681
XM_022679889.1 mRNA upstream 119441 34176108 ~ 34199772 (+) True LOC103028011
XM_022679885.1 mRNA upstream 157459 34118793 ~ 34161754 (+) True LOC111194818
XM_022679895.1 mRNA downstream 457626 34807506 ~ 34839027 (+) True pepd
XM_022679896.1 mRNA downstream 717438 35067318 ~ 35512777 (+) True chst8
XM_007251852.3 mRNA downstream 1200012 35549892 ~ 35603715 (+) True kctd15
XM_007251851.3 mRNA downstream 1200689 35550569 ~ 35603715 (+) False kctd15
XM_015606487.2 mRNA downstream 1203320 35553200 ~ 35603715 (+) False kctd15
TU219593 other upstream 1599938 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 2024184 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 2171023 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 3440901 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 2404305 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 3060112 37409992 ~ 37411969 (+) True G163105

Expression Profile