RNA id: XM_022679895.1


Basic Information

Item Value
RNA id XM_022679895.1
length 2371
RNA type mRNA
GC content 0.47
exon number 15
gene id pepd
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34807506 ~ 34839027 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCGTGGGTCAGCTGATATAAACACGTGACCGCGTGGCTCAGCTGGGAGAGGAGAGCGATGGCTGCTGCTGGAGGgaaAGCTGTGTACTGGATGGGGAAGGACACCCTGCAGGTGTCGGCTGCTCTGTTTGCGGAGAACCGCCGGCGCCTGTGTGCGGGTCTGAAGGGTAGACAGGGGCTTCAGCCCAAATCACTGGTGCTGCTGCAGGGAGGAGAGCAGAAACAGAGATACTGCACCGACACAGACATCCTCTTCAGACAGGAATCCTTCTTTCACTGGACCTTTGGCGTGACTGAGGCTGACTGCTATGGAGCTGTTGATGTGGACACCGGAAAAAGCCTCCTCTTCGTACCCAAGCTGCCCGAGAGCTACGCTACCTGGATGGGAGAgATCTACCCAAAGGAGCACTTTAAGGAGAAGTACGCAGTGGATGAAGTGCACTACACCAGCGATATAGCTGATGTCCTCACCAAGATGAAGCCATCCGTCCTCCTCACACTGagAGGGCTGAATACAGACAGTGGCAGTACGACTCGTGAGGCATCCTTTGAAGGAATCAGCAAcTTCCAAGTGGACAACTCCTTCCTGCACACTATCATTGTGGAATGTCGTCTGATTAAGACTGATATGGAGTTGGAAGTTCTGCGCTACACCAACCGCATTTCCAGTGAAGCTCACAAAGAGGTAATGAAGACTGTGAAGCCCGGCCACAAGGAGTATGAAATGGAAAGtctgTTCAGTCACTACTGCTACTCCCGTGGAGGAATGCGGCACACCTCCTACACCTGCATCTGTGGAAGTGGGAATAACTCCTCTGTTCTGCACTATGGCCACGCTGGAGCTCCCAATGACAAGACCATTGAGGATGGAGACATGTGTCTGTTTGACATGGGTGGAGAATATTACTGCTACACATCTGACATCACCTGCTCCTTCCCAGCAAACGGAAAGTTCACCCCCGACCAGAAGGCCATTTATGAGGCTGTGCTCAAATCCTCCCGTGCCGTCATGGCCGCCATCAAACCAGGTGTGAAATGGACTGATATGCACCGCCTGGCTGACCGGGTTCACCTGGAGGAGCTGGTTAAGATTGGCATTGTGCATGGGAATGTGGAGGACATGCTTAAAGTTCACCTGGGATCTGTCTTCATGCCCCACGGACTGGGACACCTGCTGGGCATCGACACGCATGATGTAGGAGGATATCCAGAGgGTACTGAGCGTGTGGATGAGCCGGGGCTGAAGAGTCTGCGTATGGGCCGTGTGGTGCTGAAAGGCATGGTCCTCACAGTGGAGCCCGGGATCTACTTCATCAACCACGTGCTGGACAAGGCCCTGGCCTCCCAGGAGCAGTGCGGCTTCATCAACAACGACGTGCTGGCTCGATTCCGCGGATTTGGAGGGGTGCGTATTGAAGATGATATTGCAGTGACTGAGGACGGTATGGAACTTCTCACCTGTGTCCCGCGCACTGTGGAGGAGATCGAGGCCTTCATGGCGGACAGAAGCCCCGAGAAATCCTTCAGTCCTGCAGTCAGCAGCGAGAAATTCTAAAATCTCCATGAATAAAGCACTCCTCTGTTATCTCGTTCTCTGCAGAATTACTTCATTCGCTTTTTGTTTCTGATTTGGCAAAACACAGTTATTGTTTTTAAAGGGATTTAAAGAATTTGGCACGATGGAAAAGCCCTCTCCTCCTACACAGTTTACATACAATCAAATGAAGGACCTGAAGAGACCTAATCGTCTACTGTAGAATTAAATACAGTTTGATTACACTTGTTTGAATGGTCATAATGACCATATTCTGCTTTTCTTGGTCAGTTATGCATcgattaaaatgtaattaaactgtgaatgtatggaattaaaaaaaatagcacctCTGAAGAAACCAAGTAGTATTAACACAGCAGACTCTGAGTATATGTGAGAAGTTCTAGCAGAACTAAATTATGTAGCTAtaattctctgattttgtgcTAACAATCTGTGCATAATATGCATGTTTAACACAGTTCTTTAagcaataaatgcattttctaaaataatgaaaataaataaataaataaataaatgatttgatGCTTTATTTGTAAATCCAGGCCCATTTTTACTTTCTGCGAGTTTTATGTTCAGTGCCTCAAAATATGAAAACATGAGCACAGCAGAGACTTGACACTTGCATACACTGCAGTGTACTGCCAATGTAAATTTACCGGTAATCTGATGTAGTAAAAGTACATACTGTATGTCTTATGTTACCGTATTTGGTTTGCttgatttacagttttttttttgtcttttggcAATTCATTTCTTATAACCAAACAGCCTTGttcttaaataaacttttttccaAGCATTCTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function

KEGG:

id description
K14213 PEPD; Xaa-Pro dipeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220167 lncRNA upstream 13674 34793569 ~ 34793832 (+) True G162535
TU220166 lncRNA upstream 14360 34792899 ~ 34793146 (+) True G162534
TU220165 lncRNA upstream 14680 34792533 ~ 34792826 (+) True G162533
TU220162 lncRNA upstream 23815 34777207 ~ 34783691 (+) True G162530
TU220145 lncRNA upstream 152066 34654961 ~ 34655440 (+) True G162518
TU220228 lncRNA downstream 5260 34844287 ~ 34892308 (+) True G162581
TU220233 lncRNA downstream 69710 34908737 ~ 34909108 (+) True G162583
XR_002651202.1 lncRNA downstream 106617 34945644 ~ 34954135 (+) True LOC111194737
TU220259 lncRNA downstream 252844 35091871 ~ 35093395 (+) True G162597
TU220261 lncRNA downstream 322354 35161381 ~ 35175910 (+) True G162599
XM_022679894.1 mRNA upstream 457626 34319213 ~ 34349880 (+) True LOC103044586
XM_022679893.1 mRNA upstream 492282 34300018 ~ 34315224 (+) True mios
XM_007242176.3 mRNA upstream 492282 34300018 ~ 34315224 (+) False mios
XM_015604004.2 mRNA upstream 589703 34213886 ~ 34217803 (+) True LOC103027681
XM_022679889.1 mRNA upstream 607734 34176108 ~ 34199772 (+) True LOC103028011
XM_022679896.1 mRNA downstream 228291 35067318 ~ 35512777 (+) True chst8
XM_007251852.3 mRNA downstream 710865 35549892 ~ 35603715 (+) True kctd15
XM_007251851.3 mRNA downstream 711542 35550569 ~ 35603715 (+) False kctd15
XM_015606487.2 mRNA downstream 714173 35553200 ~ 35603715 (+) False kctd15
XM_007251853.3 mRNA downstream 947303 35786330 ~ 35803285 (+) True lsm14a
TU219593 other upstream 2088231 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 2512477 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 2659316 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 3929194 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 1915158 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 2570965 37409992 ~ 37411969 (+) True G163105

Expression Profile