RNA id: XM_022679903.1


Basic Information

Item Value
RNA id XM_022679903.1
length 1676
RNA type mRNA
GC content 0.50
exon number 9
gene id dnaaf4
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36127139 ~ 36136740 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGTGTTTGCTTAACCCCTCCCCTAACGACCACTGCGGCTTCATAGCAACCACGCTAAACTGAGGGCTGGAGAGGTAAACGAGGGGCTGGAGAGTTAAACTAAGGACTGGAGAGTTTAACTGAGGGCTGGAGAGGTAAACGAGGGGCTGGAGAGTTAAACTAAGGACTGGAGAGTTAAACTGAGGGCTGGAGAGGTAAACGAGGGGCTGGAGAGTTAAACTAAGGACTGAAGAGTTAAACTGAGGGCTGGAGAGGTAAACGAGGGGCTGGAGAGTTTAACTAAGGACTGGAGAGTTTAACTGAGGGCTGGAGAGGTAAACGAGGGGCTGGAGAGTTTAACTGAGGGCTGGAGAGTTTAACTGAGGGCTGGAGATGCCGCTGCTGGTAACGGACTACAGCTGGACGCAGACAGAGAGCACGGTGTACATCAGCGTTCCGCTAAAGGGGGTGAAGCCGGCCAGAGTGGACGTTCTGTGTACAGATGAGTATCTGAAGGTTAGTTTTCCTCCATTCCTGTGTGAACTGTTCCTTTCTCAGCCTGTAGAAGAGGAGAAAAGTGTGGCCAAACTCGGGAACGGTGCTGCAGTTTTCACTCTGCCCAAACAGACAGCAGGCCTGTGGGAGAAGCTCAGCAGAGATGTGGaCAAAAGCAAACAAAGGGAGATTCGAGAAGAAGCTATTCTCAAAACTCAGAACAAGGCTGTGGAGACCACCAAGGCAAGAGCCACAAAAATTCAGCAGGACAAGAAATACACATTGGAGACCATGATGAAGCTTGAGGAAGAGGAGCGAGCAAGAATTCAGAAGATAAAAGATGAAGAGTGTGCAAAAGCCTCAATGGAACTGGAGGCATGGAAAAAGAATCAGAGAAGATTagcagaggaagaggaggccAGACGAAGGCTACAGGAACCCCCTGTACAGAAGAGTAGACCTGTTCATCAGCAGAGAGAGCCAGAAAAAGCATGTGTGATGAGAGCCTCAAATAACCCAAGCAAAACTGAAGGTCAGACCACCAGCAGAAACATGCAGAAACAGAAGGATCTACCTCCCCCCAGATCAGCCGGCTGTATTAAGATCAGTTTCACTCCACGTGTTTTTTCAACTGCCTTACGGGAGTCCCGCGTACCTGAGGAAGAGGAGTGGCTGAGGAAGCAAGCAGAGGTCAGAAGGATGGCGAATGCTGATCTGGCTCAGCTGGACGATCtgaaggaggaagagaagaaccCTGACTGGCTAAAAGACAAAGGAGaTAAATTATTCAGGACTGGTAATTATCAGGCAGCAGTTAATGCCTATGATTTGGCCATTAAACTCAACAGACGCATTCCTGCCCTGTTCTCTAATCGAGCTGCGTGTCACCTGAAGCTGAGAAACCTACACAAAGCCATTGAAGACAGTTCTCAGGCTCTGGAGCTGCTGACCCCAGCCGTCACTGACAACGCAGCAGCCCGACTGAAGGCCCACGTGAGGAGAGGAACTGCTTTCTGTGAGCTGGAGCTGTATGTGGAAGGACTTCAGGACTACCATGCTGCTCTCAAGATTGACCCGAACAACCAGGCTCTGCGGGCAGATGCCGACAAGATCCGAGAGATCATCCAAGGGACGATGTCCAGTTCGTGATGAGTGACAGTGTTGTCAGtgctataaataaatagagaatCTATAAGACTGCC

Function

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process
GO:0070986 left/right axis specification biological_process

KEGG:

id description
K19758 DYX1C1, DNAAF4; dyslexia susceptibility 1 candidate gene 1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220552 lncRNA upstream 3277 36121722 ~ 36123863 (+) True G162829
TU220553 lncRNA upstream 6738 36119381 ~ 36120402 (+) False pygo1
TU220449 lncRNA upstream 298315 35828020 ~ 35828825 (+) False G162746
TU220583 lncRNA downstream 43100 36179840 ~ 36181301 (+) True G162848
TU220585 lncRNA downstream 46020 36182760 ~ 36183548 (+) True G162850
XR_454969.3 lncRNA downstream 46979 36183719 ~ 36185659 (+) True LOC103046468
TU220576 lncRNA downstream 47035 36183775 ~ 36185631 (+) False LOC103046468
TU220579 lncRNA downstream 47035 36183775 ~ 36185631 (+) False LOC103046468
XM_007251864.3 mRNA upstream 7190 36112042 ~ 36119950 (+) True pygo1
XM_022679902.1 mRNA upstream 16733 36073806 ~ 36110407 (+) True prtg
XM_007251884.3 mRNA upstream 16733 36073807 ~ 36110407 (+) False prtg
XM_007251863.3 mRNA upstream 62718 35995972 ~ 36064422 (+) False nedd4
XM_007251867.3 mRNA downstream 5348 36142088 ~ 36148102 (+) True LOC103046170
XM_022679908.1 mRNA downstream 12555 36149295 ~ 36169745 (+) True ccpg1
XM_022679906.1 mRNA downstream 12555 36149295 ~ 36169745 (+) False ccpg1
XM_022679907.1 mRNA downstream 12556 36149296 ~ 36169745 (+) False ccpg1
XM_007251869.3 mRNA downstream 52028 36188768 ~ 36223035 (+) True rab27a
TU219593 other upstream 3407865 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 3832111 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 3978950 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 5248828 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 617445 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 1273252 37409992 ~ 37411969 (+) True G163105

Expression Profile