RNA id: XM_022679911.1


Basic Information

Item Value
RNA id XM_022679911.1
length 7081
RNA type mRNA
GC content 0.51
exon number 29
gene id LOC103026877
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36970710 ~ 37261985 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctctctctctctttctctctctacctctacctccttctctcacacactcaaacacacacgcacgcgctCGCAGGGTCGGTCCCAGACGCCCCGTctgcagcctctctctctctctctcagtctgggACAGACAGCGCGAgcggagagagggggagaaggaCGGATCCCGGTAAAAGGGAGAAGAGAGCGGAAGCGCGCGCACCATGAGTCCAGGCGCTACGGCGGCGCGGAGCTGAGGGGCACGAGGATGGCAagcggagggagggaggagaggaggacGCGCGGCTGAAGGAGGAGTGCGGCGCGTGCGTTCATTCATTCCGGAGGCTGCTGCTCGTGCTCGTACTGTTGCATCGCATCGCGCGCatagctctctctctatcctcgtctatctatccatccgtcCGTGCCGAGGATGCTCCATTAAGCTCGCGCTGACAGCTCTCGTGCTTTTTTCGTTACGTCCTGCGGCGCCTGGGCTCCAGAAAACCGGATATAACGCACGCGCTCTCAGatAACGGACACCATATCTGAAGAAAGCCTTTGGATATATCCCATATAAAGGATTTACAAAAGTTTGGCTTGACACTACTGCTGCTTCTAAGGGCACGTTTTCTCTAGACATTTTCTTCATGCCTCAGGGTTGGCTTTGAAAACTCATGAaagtgtttttgtctgtttttgtcgATCACCAGTGGATATAAAACCAGTTCTGCTGTAGCGCGATTTGGAGTGCAAACAGGCTACAACATTGCCCTCCATGGTTTCTGCCCATCTAAAGAAGCTATCGTCTTACATTTTTAAGATTTGCAAAGGAATGTTTACAAAGAAACTGGCAAATACcacaaagaagaaagagagtagcgaaaataaaaaagatcccAAATCGTCCCCCGAATTGCACGCTCGGAATACGACCTTTTCCACCACGTTGAAAAGCACAGTTAAAAAGATTTCTAAATGCTCGTCAGCACGCAATATATCTCTTGAAGAAGACGACGGTAAAAACGACTGCTCTTCTCTGTCTCCCACGTTCAGTTACCGCGTGGCTATTGCTAACGGACTCCAAAAGAATGCTCTCCCACTGAATAATGAATTTCACGAAATATTGTCTATTGACAGCAGTTACTCTGACTCTCTAAACGAGGCCAAACTTGTCCATAGATTTGATGAACAAAAAGCTTACACGATGCCAGTAAGAAGGAACAGGAAAAGCATGATTAGCTTGGCACCCTCTGATGGCAGCTCAGAGGGTGAGCGTGGAGAGCGCACCAGTCTCCACACCCTCCGACTAGGCGCCCTGAAAAAgctgaggaaatggaagaagaGCCAGGAATGTGTCTCCTCAGATTCCGAGGCCAGCAACTGGAGAAAAACTCTTGGCATCCGGAGCAAGTCTCTGGATCGAGCGGGGAGGCAGCAGAAAACCACCACCCTGGAGCCTGGATCCAGCTCCACAGGTTGCATCAGTCAAACACAGGATGTGATGGAGATGATCTTCAAAGAGCTTCAGGGAATCAGCCAAATTGAGTCTGAGCTCTCGGAGCTGAGAGGGCACGTTAATGCCCTCAAAAGCTCCATCGATGAAATCTCCAGCAGTGTGGAGGTGGTGCAGAGCGAAATCGAGCAGCTGCGCTCTGGATTCGTGCAGTCCAGGAGAGAAACGCGAGACATCCACGACTACATCAGACAGATTAGCCACCAGACCAACAAAGCTACTTTGAGATTCCTAAATGTGCCTGAGGAGAAGTTCGAGAGAACTGAGGAACTCATTTATCAGATTTTGAAGGAGAAAATGGGTTTCATTGAAGCACACAAGACACTTAAAATTGAACTCGCCCATCGGTTGGGGCAACAAAGAGAATGTTCAAATGCAAAACCTCGTCCTATTATAGTTATTTTTGGAACTCCTCAAGACAGggatttagttttgaaaaagtgTTACAAGCTCAAAGGCACTGGAATATCAATCTCCACTGACAGTCTTGCACATGACTCGAAAGAAAAGAAGGATAAAGGCATGAGCTCTTCCCAGACTTACGAAAGCATGGACATCAAAGTGTCGGCCAAAGACAAGGCCGAGAGCGATGACTGGGACTCGATGGACAGCGATAAAGAGCTGGAcgaattaaacaaaaacaaatatgcaATTGTGTCCAAACCACCTCAGAAAACTAAAccagacaaaaaaaagtctcacGATCACAGAAGGTCTGCAGACGACACCTCGTACTCTGTGCATTACGCAGACGATACCGTGTATGACGACAAGCAACACAAGTCCTACTATTCTGATATCACTCCCGGTTGGCTCTCCCAAAGTGACTACTCCACTCCTAAACTCAGTCGATCAGAATCGGACTGCTCCAAACTGTGTCAGTCGTACTCTGAGGATTTCTCCGAGAGCCAGTACTTCACCAGAGCAAATGGATGCTCCCTGCTCTCCTCCTCAGATCAGGAGCTCTGGCAGCGGAAACAGGAAGACATGGCTTCATCCTGGTATGCAAGTCCACCCAGTCAAACCCTCAGTCAGGAAAACCCACATGCGTATGTGGAACACAACGAAGTGGAGACCACAGAAACCATCGACAGTGGAGTCAGTAACGGTCTGGTGTGCATGTCCGGGGACAGAAGTCACTACAGTGGCTCTCAGCTCTCTCTGCAAGGTGATCTCTCCCCTTGGAAAGACTGGCATCACCTTGAACAAGGTGCTGACTCAGGCTTGGATGCCTCCACTGAACAAAACATTGTTTCAGAAATTAGCAGCCCATTTgatcctgctgctaacccaggctTCCCTGAGAAGATTACAAAATGCCTTGAGGTCGATTTGCAGTTTGAGGGCGAGACCTTCTTTGACAGTACGCCTGAGACGACCCAGGAGGTCGACATGGAGCCAGAACCTATCCTTGAACCCGAGTTTGAACCTGAGTTGGAACCTGAGTTAGAACCCGAGTTAGAACCTGATGTGGAACTCAAACCACAACCTGTACCTGAGCCAgtacctgaaccagaacctgagcCAGAACCTTTGATTGAAGCCGTCATAGAGCCCATGGTAATACCCAAAGTTGTACAAGAGCCTGCAAAAGAAGCGAAAactgaaaagaaacaaaagaccAAGACTAAAACCAAGCCAGAGTCAGCCCCTCAGACTCTGCAACGGCCAGAGTCCAAGGGGAACCACTTACAACAAAGTCAGAAATCTTCAACCATGTATCGTAGCCAGAGTGAGATCAGGACTGAAAAAGTGGAAGAGGTCCCCAAATCCTGGAGCAGCAGATTGAGCATAGACCTGTCTGAGAAGACCTTCAGCTTCGGCGGTTTTGGGTCCACACTGCAGCGAGCCAAATCTGCTCTAGAGGTCGTCTGGAATAAGGGATCCCAAAGCTCAAGCGCTCCTGCTGAAGAGCCGCCGAGCACCTCCTCTTTTATGGGTCGATTCAGGACCATGTCCCAGTCTACAGCTAACGATTCCAGCACCACGATCGACTCGGATGTCTACACAGAGCCCTTCTTCTACAAGGCTGAAGACGAAGAACAAGCCACAGAGCAACCTGTGGACAGTGAGACACATTACGTCGAGGTGATGGAGCAAGTTCTGGCAAACCTTGAGAACAGAACAAACGCCAATGAGGCCGAGGCAGTGGAACAGTACCAAGAAGAAGAGTACGAAGTCTCCCAAGAGTACGACATTTCGCAAGAAGGGAACCCCGTCTTGGAGTATGACTGCAGTCTGGACGAACATTACGATGAAGAATACAGCGAGGATTACGACGATAACCAGATGACTGAGGACACTGCGGAGTATGACGCCATGGTCGAGTACATCGAAGAAACCGAGGAAACGTTGGATGAGGTTGAGAAGCTAGAGGAAGACGAGGAAGCAGAGATAGAGGAGGTGCAGGAGGTGGAGGTGCAAGACACTGAATCTACACCAGGTGCAGAGGAGGTCAAAGAAACAGTGCTTCAGGAAGatgaaaacaaaaatgtcaCAGAAGCGCCTCCGGCAGTGCAGGAACCGGCCCCCAAGAAAAGGATGCGACCAACCTTTAAGGAAGCTGCTTTGAGGGCATACAGGAAGCAAAtggctgagctggagcagcagattCTTGCTGGAGACAGCACGGCTTTGGACACACAGGGTCGTGGAGGAATCCTGGATCCGGCTAAGCTTGGCCTGAGTATAGGAGGGGCTGGCAGCATTCTTTACGGCATTGACAGCATGCCAGATTTACGGCGGAAGCGGACCGTGCCTATCGTCAGGGACCTGGCAGGCATTTCGTTTGCGCTCGTGACCAGGTCCACCCTGAACAATGAGGATCTAAAACTGCAGGTGTTGAGAAAGACGCTACAGGCTCTAATTTATCCCATCTCCTCCACCACCCCCCACAATTTCGAAGTCTGGACTGCGACCGCCCCCACCTACTGCCACGAGTGTGAGGGGCTGCTGTGGGGCATCGCGCGGCAGGGAATGCGCTGCACTGAGTGTGGGGTCAAATGCCACGAGAAGTGCCAGGACCTGCTGAACGCAGACTGCCTCCAGCGCGCGGTGGAGAAGAGCTCCAAGCATGGTGCAGAGGACAAGACCCAGAACATCATCATGGCCATGAAGGAGCGAATGAAGATCCGGGAGAAGAACCGCCCAGAGGTGTTTGAAGTCATCCAGGACATGTTCCAGCTCTCCAAGGAGGACTTCACCAGCCACCTAAAGAGCGCCAAGCAGGCCGTGCTGGAGGGGACGTCCAAGTGGTCGGCCAAGATCGCCATCACCGTGCTTTGCGCCCAGGGCTTACAGGCCAAGGATAAGACGGGCTCCAGCGACCCCTACGTCACCGTGCAGGTGGGCAAGACCAAGCGCAGGACCAAAACCATCTTCGGCAACCTCAACCCCGTCTGGGACGAGACCTTCTTCTTTGAATGCCACAATGCTACAGACCGTATAAAGGTGCGGGTGTGGGACGAGGATGACGACATCAAGTCTCGAGTGAAGCAGCACTTTAAGAAAGAGTCGGACGACTTCCTGGGACAGACCATCATCGAGGTCCGAATGCTGAGTGGAGAAATGGACGTTTGGTACAACCTCGAAAAAAGAACGGATAAGTCCATGGTGTCCGGGGCCATCAGGCTGAAGATAAATGTGGAGATGAAGGGAGAGGAGAAAGTGGCTCCGCCTCACGGCCAGTACACATGTTTACATGAGAACCTGTTCCACTATCTGACGGAGGTGAAGAACAGCGGCGCTGTGAAGATTCCTGAGGTCAAGGGTGACGAGGCATGGAAGGTTTACTATGATGACGTTTCTCAGGAAATTGTGGATGAATTTGCCATGCGCTTCGGAGTGGAGTCCATCTACCAGGCCATGACtcATTTCTCCTGCCTTTCATCCAAGTACATGTGTCCGGGAGTTCCAGCTGTAATGAGTAACCTGCTGGCCAACATCAACGCCTACTTCGCCCACACCACCACCGCCACCACCAACATCTCCGCCTCCGACCGATTCGCCGCTTCCAACTTCGGGAGGGAGAAGTTTGTGAAACTCCTGGATCAGCTGCACAACTCTCTGAGGATTGATCTGTCCAAGTATCGGGACAATTTCCCCGCCGGAAACCCAGAGAGACTCCAGGACCTGAAATCCACAGTGGACCTGCTGACCAGCATCACCTTTTTCAGAATgaaggtgcaGGAGCTGCAGAGCCCCCCCAGAGCGAGCCTGGTGGTGAAGGACTGCGTCAGGGCCTGCCTTGACTCCACCTACAAATACATCTTCGACAACTGCCACGAACTCTACAACCAGCTCCTGGACCAGtctaAGAAGCAGGATTTGCCCCGTGAGGAGCAGGGTCCATCCATAAAGAATCTGGATTTCTGGCCTAAGCTCATCACTCTGATGGTGTCGGTGATTGATGAGGACCGAACAGCATACACACCCGTCCTGAACCAGTTTCCTCAGGAGCTGAACATGGGGAAGATCAGTGCTGAGATCATGTGGAGCCTATTTGCCATGGACATGAAATACGCTATGGAGGAGCACGATAAGCAGCGTCTATGCAAGAGCACGGAGTACATGAATCTGCACTTCAAAGTCAAATGGTTCTACAACGAGTACGTGAAAGACCTGCCGGCCTTCAAGGGCACTCCGCCGGAGTATTCTCTGTGGTTTGAGCCTTTTGTCATTCAGTGGCTGGATGAGAATGAGGATGTTGCCATGGATTTCCTCAATGGAGCTTTGGAGAGAGACAAGAAAGATGGGttCCAGCAGACGTCTGAGCATGCTCTGTTCTCCTGCTCGGTGGTGGACGTCTTTACGCAGCTGAACCAGAGCTTTGAGATCATTAAGAAGCTGGAGTGTCCAAACCCACAAGCCCTCGCCCACTTCATGTGCAGATTTGCTAAGACCATCAACAAAGTTCTCCTGGAGTACGCCGCCATCATCACCAAAGACTTCCCCTCCCACCTCACTAAAGAGAAAGTGCCCTGCATCCTGCTGAACAACATCCAGCAGCTCCGGGTTCAGCTGGAGAAGATGTTCGAGTCCATGGGAGGAAAGCAGGAGGAGGGGGTTGTGGCCTTCTGTAAGCTGGATGCTGAGGCCAGCGATCTTCTGAAAGAGCTCCAGAACAAACTCAACGCCGTGCTGGACGACCTCAGCAGAGTGTTCGGATCCAGCTTTAAGCCTGTTATAGAGGACTGTGTGAAGCAGATGAATCAGGAGCTGGTCCAGATGAAAGGAACTGCTGGGAACAAAAGCAACGCAGCCATGGACGCCGAGACTGTCCTCCGACCCCTCATGGACCTGCTGGATAAGAATCTGATCCTGTTTGCCAAGATCTGTGAGAAGACGGTGCTGAAGCGGGTTCTGAAGGAGCTGTGGAAAATCGTGCTCAACACCATCGAGAGGCAGATTGTCCTGCCTCCTCTCACAGACCAAACGCAAGGAGCTCAGATGATTTTCAGTGCCGCCAAGGACCTGGGACAGCTCTCCAAGCTGAAGGAACATGTGATTCGGGAGGAGGCTCGCAGCTTGTCGCCACGTCAGTGTGCAGCAATGGACTTGGTGCTTCCCACCATCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220856 lncRNA upstream 10157 36959829 ~ 36960553 (+) True G163039
TU220852 lncRNA upstream 14039 36956404 ~ 36956671 (+) True G163035
TU220846 lncRNA upstream 15718 36953686 ~ 36954992 (+) True G163030
TU220799 lncRNA upstream 18059 36951065 ~ 36952651 (+) False G163028
TU220818 lncRNA upstream 18755 36947851 ~ 36951955 (+) True G163028
TU220893 lncRNA downstream 38782 37300767 ~ 37301122 (+) True G163071
TU220891 lncRNA downstream 85447 37347432 ~ 37349060 (+) False LOC103046025
TU220909 lncRNA downstream 104133 37366118 ~ 37371848 (+) True G163087
TU220910 lncRNA downstream 104133 37366118 ~ 37371848 (+) False G163087
TU220912 lncRNA downstream 104133 37366118 ~ 37371848 (+) False G163087
XM_022679413.1 mRNA upstream 530902 36391175 ~ 36439808 (+) True LOC111194719
XM_007251869.3 mRNA upstream 747675 36188768 ~ 36223035 (+) True rab27a
XM_022679908.1 mRNA upstream 800965 36149295 ~ 36169745 (+) True ccpg1
XM_022679906.1 mRNA upstream 800965 36149295 ~ 36169745 (+) False ccpg1
XM_022679907.1 mRNA upstream 800965 36149296 ~ 36169745 (+) False ccpg1
XM_022679913.1 mRNA downstream 25182 37287167 ~ 37352779 (+) True LOC103046025
XM_007239647.3 mRNA downstream 125509 37387494 ~ 37399839 (+) True LOC103045417
XM_022679914.1 mRNA downstream 139543 37401528 ~ 37407914 (+) True LOC103045107
XM_022679916.1 mRNA downstream 193750 37455735 ~ 37507197 (+) True parp6
XM_022679918.1 mRNA downstream 193751 37455736 ~ 37507197 (+) False parp6
TU220729 other upstream 216023 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 4251435 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 4675681 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 4822520 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 6092398 30875118 ~ 30878312 (+) False hmgn2
TU220936 other downstream 148007 37409992 ~ 37411969 (+) True G163105

Expression Profile