RNA id: XM_022679916.1


Basic Information

Item Value
RNA id XM_022679916.1
length 4213
RNA type mRNA
GC content 0.49
exon number 23
gene id parp6
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 37455735 ~ 37507197 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacacacacacacacactttctcctgTTGTAGGTATGATTCATGGACGGTGATGGGAGCCAGCGATGTCTGTTGCTAGGATACATCTCTGCAGGGTGGAGAGTGTGTGATTAAGAGGACAGAAAGAGAGCGATTATAAAGTGGTGTGATTAGGCGGAGGAGAGACTAATGCTTTGGGGACTAAAATACTGATTGAAAATGGAAATACTGGGTCCAGTTGGCTTGGCTATCAGGTTTGACATGGAAAATAAGGTGTTTGGAAAGCAGCAGAATCTGAAGAGTTCTAGCTCCCCCTGAGCAGAGCGTTCTGTGGCTGTGGGTTGTGTTGTGAAATGGATGGGAACAGTCTAACCCTGTCAGATCTGCCTCTGTAAATGTCGGATCCAATGAGGAGCGTTCAGGTTAATGCTGGTGAAGTTATGAGCACGCCCGAGACTCGCCTTTAACATGGCTGGCTGTTTTCCTCAGGACATCAAAGGCCAGTGCTGGACGGATGAGGAATCAGACGGGGAGAATGAGCCGGAGCAGTTCATGTATGGAATTCagGGAAGCTGTGCAGCTGATCTGTACCGGCACCCGCAGCTGGATGCAGATATTGAGGCTGTGAAAGACATTTACACAGAGAGTGCTGTGTCCATCAGGGAGTATGGAACAATTGATGATGTGGATATTGACCTTCATATCAATATCAGTTTCTTGGATgaGGAAGTGGCCACAGCTTGGAAGGTCATTCGAACAGAACCAATCATCCTCCGACTTCGCTTCTCACTCTCACAGTACTTGGATGGGCcagAACCCTCAGTGGACGTGTTTCAGCCCTCCAATAAGGATGGATTCAGTCTTGGGCTTCAGCTAAAAAAGATCCTGAGCACGTTCACCTCCCAGCAGTGGAAACATCTGAGCAATGAGTTCCTTAAAGCCCAGCAGGAGAAGAGGCACAGCTGGTTCAAGGCTGGAGGGACCATTAAGAAGTTCCGTGCAGGACTCAGCATCTTCTCCCCCATTCCTAAGTCCCCCAGTTTTCCACTGATCCAGGACACTGTGCTAAAGGGCAAACTGAGTGTTCCTGAGCTGAGGGTCAGCAGGCTGATGAACCGCTCCATCTCCTGTACCATGAAGAACCCCAAGGGGGAGCTGTTTAGCTATCCCCCCAACAGCCAGACTGTGGCAGTCCCGGCGGGCAGGGCCCCTGCGCAGATTACCACGCGGCAGCTGATTGAATTGTTTTTCTCATCCCAGGCGGGCGGACACTGCAAGAACATCCCCACTCTGGAGTACGGTTTCTTAGTGCAGATAATGAAATATTCGGAGCAGCGCATCCCCACACTGAATGAGtactgtgtggtgtgtgatgaACAGCACGTCTTTCAGAATGGATCCATGTTAAAGcCTGCGGTCTGCACTAGAGAATTGTGTGTGTTCTCTTTCTACACCCTGGGCGTGATGTCCGGCGCAGCAGAGGAGGTGGCCACTGGTGCTGAGGTGGTGGATCTGCTGGTTGCTATGTGCAGAGCTGCTCTGGAGTCTCCTCGGAAAAGCATCATCTTTGAGCCCTATCCGTCTGTCGTTGACCCCAATGACCCCAAAACTCTTGCTTTCAACCCTAAGAAGAAGAATTATGAGAGGCTGCAGAAGGCTCTGGACAGTGTGATGTCTATACGTGAGATGACCCAGGGTTCATATCTGGAGATAAAGAAGCAGATGGATAAACTGGACCCTTTAGCTCACCCTCTGCTGCAGTGGATAATATCCAGTAACAGATCTCATATCGTCAAACTGCCGCTGAGTAGGCAGCTGAAGTTCATGCATACATCCCATCAGTTCCTGCTCCTCAGCAGCCCCCCTGCTAAAGAAGCCCGTTTCCGGACAGCCAAGAAGCTCTACGGCAGCACCTTCGCATTCCATGGTTCCCATATAGAGAACTGGCACTCTGTTCTGAGAAATGGACTAGTCAATGCCTCTTATACCAAACTGCAGCTGCATGGGGCAGCCTATGGAAAGGGCATCTATCTCAGCCCTATCTCCAGCATATCCTTCGGATACTCAGggatgGGTAAAGGACAGCATCGGATGCCAACTAAAGATGAACTGGTGCAGCGCTACAACCGTATGAACACAATTCCACAGagccGCCCCATACAGTCCCGCTTTCTGCAGAGTCGGAATCTGAACTGTATTGCACTGTGTGAAGTGATCACATCAAAGGACCtccaaaaacatggaaacaTCTGGGTGTGTCCTGTATCTGACCACGTGTGCACACGCTTCTTCTTTGTaTATGAGGATGGTCAGGTGGGAGATGCTAACATCAACACCCAGGAACCCAAGGTGCAGAAGGAGATCATGCGTGTGATTGGCACCCAGATTTACTCCAGCTGAGAGGGGTCTGTTGGGGGAGGAGGGGCGTCTCCAGGGGCTTTAGAAGAGCATCCCAGCCCTCGTTGAAGAAACGGCCAAAACCTCTCAGCTTCAGCACCACTTAAACACGAGGGAATAGCTGAAAGAGCTGAGTGTCCGTCCCTCCTCTTCTTTATTGCAGCATTTCTcccgtttttctgtttttttcttctctgctgTCGTGTACGCCGAGGTTCGGATGGATGCCCCCTCTTCCCCCGCCTCCTGCTGTGAGCTCTGCGGCCTGTTTGAGGCAGCTGGGCCTGCAGGAGCCTCGTCATCGCCGTCAtcctcctcctcgtcctcctcctcctcctcctcctcgtcctcctcctcctcgtcctcctcagCAGGAAGTAAGATAAAGGAGTAATGGCAGAGCCAGCGtcacaccaaactctttcaagTAGTGCGACTACAAAGAGAAGTCGAGAGTGATACGCTCCGCTAAACTGAGCCCACGGACTCCAATCAACTGCTAATGAGAGAGCGGAACCTCGAGTGACTCCGCCCACAGCTCCAGACTCCTCCCAATCAGTGTCATCCGTCCCCCCTGAAGGACTATTCTCAGAGTAGGTGAAATGCTTCACTGGATACTCAGACCCGTCAGTTATACTGTTCTGAACTTGCCTACAAGTATGAggtgcactctctctctctctctctctctcgcgttctttttcttcttgatATCTTCATCGCAGTATTGCTTGCTCTTTCTTGCTACCGCTCCTTGGACTCCTCCGGTTCCTTCAAGCCATCTGTGAACGTTTCAAACATCCAggagaaaaacaagcaaacaaaaataagtaatctaaaaacatttattgagtTTGTTCCTCTCTGGATAGTAAGTCATGCACACCCCATGtactctttttgttttgtttgtaggAACATTATCCTGTTGATCTGTTTTCTTTCCTATTCTTTGAGTAATGACATGTATTAATATCCAAGATGCAGTTATCTCCCTGGTTGCTTTTGTTCAGCGTCTCCTCCCGGTGAAAtcaatttcctttccttttGTCTCCGGTGTGCAATatgacagaaaaacacacacacacacacacacatatatacacatacgcTCACTACAAAGATGTTTACTGCAATTTATCAGCGTGAGCATTGGATTCCTGGGCTAAAAAAAAGAGCGAACAAAAAGGCATTATATTGTTCATGTTCATAGTTATTTCTCCTAATCACTGGATTTTTTAAACTCGTGATGTTCTGGGTGGGGAAGGCTCAGCGGGTAATGCTGTAAGAAGGAGCACAGCGCTCTGCAGCTTGGTTTGGCATTCCTTAATATCCGTGTTTAAAACCATGCAGCCTACCTCTCCTCAGTTCATGACTAGACAGTCTGTTCTCCTCCAGCTGTTCTGTAAAGAGACTAGAGTAGCACCCACAGCATTGTGTTGCACTCCTTCAACCAGTGGAGTTCATATCAGACATTAAACCTGAATAAAGGCTGATCTGCTGCAAACGCACCTTTACTCCGACCTGCCCGAGCAGCCCAGTGACCCACGCCACGCACCTGTGCGTCACAGCGGAACGGAAGATGGACACTGGTGGAGAAGTGAGCAGAgtgagtgtatagagtgtgagCTCTGCCGGAGACAGGTGAAGAGATTGTTCAGGATGAATGTCGACCCTGTCTGTAGTTGTCTCTCTCTCGTGGTCTGTTGTCTTGGTTGTGCTTTTACCAGGCTGCCCCGCACAGTTCCTGCTCTTCTTCTGTCAGTGCTCTGTGTAAACTGATGTTCTGAAAGCAGCACGGAAGATCCAATAAAGAGAGATTTTGCACAATTTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG:

id description
K15258 PARP6_8; poly [ADP-ribose] polymerase 6/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220944 lncRNA upstream 17686 37437568 ~ 37438049 (+) True G163110
TU220921 lncRNA upstream 81530 37374006 ~ 37374205 (+) True G163095
TU220909 lncRNA upstream 83887 37366118 ~ 37371848 (+) True G163087
TU220910 lncRNA upstream 83887 37366118 ~ 37371848 (+) False G163087
TU220912 lncRNA upstream 83887 37366118 ~ 37371848 (+) False G163087
TU221004 lncRNA downstream 40840 37548037 ~ 37548293 (+) True G163161
TU221094 lncRNA downstream 457133 37964330 ~ 37977105 (+) True G163241
TU221103 lncRNA downstream 477861 37985058 ~ 37987068 (+) True G163247
TU221176 lncRNA downstream 1164085 38671282 ~ 38672233 (+) True G163288
TU221184 lncRNA downstream 1230522 38737719 ~ 38740775 (+) True G163296
XM_022679914.1 mRNA upstream 47821 37401528 ~ 37407914 (+) True LOC103045107
XM_007239647.3 mRNA upstream 55896 37387494 ~ 37399839 (+) True LOC103045417
XM_022679913.1 mRNA upstream 102956 37287167 ~ 37352779 (+) True LOC103046025
XM_022679911.1 mRNA upstream 193750 36970710 ~ 37261985 (+) False LOC103026877
XM_022679921.1 mRNA downstream 82788 37589985 ~ 37835900 (+) True LOC111194820
XM_007242261.3 mRNA downstream 437004 37944201 ~ 37946249 (+) True LOC103021700
XM_022679415.1 mRNA downstream 1437205 38944402 ~ 38945904 (+) True LOC111194723
XM_022679931.1 mRNA downstream 1438979 38946176 ~ 38951124 (+) True LOC111194822
XM_022679428.1 mRNA downstream 1585282 39092479 ~ 39094807 (+) True LOC111194738
TU220936 other upstream 43766 37409992 ~ 37411969 (+) True G163105
TU220729 other upstream 701048 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 4736460 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 5160706 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 5307545 32068862 ~ 32148190 (+) True G162017

Expression Profile