RNA id: XM_022679951.1


Basic Information

Item Value
RNA id XM_022679951.1
length 2629
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC103036843
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 40759275 ~ 40765548 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcttctctctctctctctctctgtctctgagctCGTGCGGAGCTCCGTGCGCGCGCTGTGATTGCAGAGCAGTCAGTGCTCATCTTCAGCACGAGCTCCACTTACCTGAGCACGCGCTCCACAGAGCAGATCCTCAAGCGCGCGCGCGCTGTCCCCAACAGAGGAATTACTATCTCCTATCTAACCCTGATCATCCCTCAACATCTCCACTGAACATCTCCACTAAATATCTCCACACGTCTCCTCCAGAATGAACTGGACTCTACCAGCGACTCTACACGGTCTGACTGAAGGCGACGTGTCCACCAGTTCAAGAATGTTGGGAATCTGACAGAGGCGACGCCATGGATCCCTGGATATTTCCATCCTCGCCCCCCAACCTGACCGAGCCCCCCATGTACGACAGCTACATGCTGAGCAACGACTCGGACCCGCCCCCAAAGAACAACACCGACAACGACAACCCCAATCCCGGCACGGTGGTGATCACCTTCATCTACTTTGTGGTTTGCGCCGTAGGGCTCAGCGGTAATACCCTGGTTATCTACGTCATCCTGCGCTACGCCAAGATGAAGACGGTCACCAACATCTACATTCTCAACCTGGCTGTGGCCGATGTGCTCTTCATGTTGAGTCTGCCGTTCATCGCCATCCAGCTGGCTCTGGTGCACTGGCCTTTCGGTTTGGCGCTGTGCCGCGTGGTCATGACCGTTGACTCTTTGAATCAGTTCACCAGCATCTTCTGCCTGATGGTGATGAGCATTGATCGCTACCTGGCCGTGGTGCACCCCATCAAATCCACCAAGTGGAGAAAGCCTCGGGTGGCCAAGACCATCAACCTGGCGGTGTGGGGGGTGTCTCTACTCGTCAACATGCCCATCGTCATCTACAGCGGCTTGATCACCAAACCAGGCGGCTGTTTCTGCACCATCGTTTGGCCGGAGCCGGAGGAGGCGTACTACACCGCCTTCATGTTCTACACCTTCTTCCTGGGCTTCTTCCTGCCGCTGTTGGTGATCTGCTTGTGCTACCTGCTCATCATTGTCAAGGTGAAGTCCTCCGGGATACGGGTGGGCTCGTCCAAGCGTAAGCGCTCCGAGCGGAAGGTGACGCGAATGGTCTCCATCGTGGTGGCCGTCTTCGTCTTCTGTTGGCTGCCTTTCTACGTCTTCAACGTGACGTCGGTGACGGGCTCCATCAGCACCACGCCCATCCTGAGGAGCACCTTCGCCTTCGTGGTGGTGCTGGGATACGCCAACAGTTGTGCCAACCCTATTCTGTACGCCTTCTTGTCGGAGAACTTCAAGAAGAGCTTCCAGAACGTTCTGTGCCTGAAGAAGGTCGGCGGACTCGATGAGATTGAGCGCAGCGACAGTCGGCAGGACAAGTCGCGAATGATGAACGACCCTACGGAGACCCAGAGCACGCTGCTGAACGGAGACCTGCAGACCAGCATCTGAGCTTGGTTACTTCTGAATGTCCTGAATGTCCTGAAAGTCCTGAACGTCCAGGGAAACACTTGTTTAGTCCAAGTTTAGAGTGTTTGGGTTTCAAAACCCAACAGATTCAGGTCAAAGTACTCAAAGTCAACTTGCGTTACCAGTGTCAGGATTGGAATTGGGTCGTTTTATTGAACTCCTTTTATTGAACCCATTGGTGGGTCATCTTAAACATCTTGTCCAAAAGATATAAGAAGTCATGTTCCTTATTTTTCAGGAACATTCAGAACTTCCTAAAGTCTGTTCAAGATGAGGTTACAACAAAATCATTGAATTGTTGGACTAAACGACTAATCATTTCAGTTGCTAATAAGTTTTTGATGTGTAACCCTGCATTGACaagtcaagacaagacaaaacaagacaagataaaacaagacaagacaagacaatcaACAAAAGAGTGTTACATTAGTGGAATTCGAGATGGAATTTCGAGATGGAACTGAGCAAACACTCTAGAGTCTGGAGTGGTGGTGGTTGGCAGCCATTGGCGCCAAATTTGGAGCCAAAACTGGGTTTCGAACCCACAACCTGGTCATCTACAACCCAGTGCCCAACCAAACCCTACAGTATTGTACTCAAACAGGGCCTGTCTTTCCTAAAGTGTCCTATAATTGAGTAACTTCAAACAGAAGAGCATGGTGACCATGCCGTTCTCCAAATAACAGAAGGTCAGACTGACAGCAGACCCATATAAGGAGGTTTGGAGTTGGGTTGCCTGCAGCTGAGAATTTGCTCCTGAAAAACAAACAGGCGACCGGAACAGGAGTTCAccaccgccgccgccgccaGCGCTGGACGTAGATGGAATTTGGCCTCCACCTTTGATCCATCTGTTGTGtgaacacagagacacacaaacactgaaacTGATATGGTCATGCTGGAGTGGTGGGCAGCCATTGCCTTTCtgaaaaagagatagaaaaggagaaaaaagtcCACTTTTTCCAAGAGTGGAAGCTTGAAGCTTGAAGAACATGGATATCAAACCTACATCCATCATAACCTGGCAATCGATAACTTATTATTGATTCAACTGCTGAGCcaacactgcactgaaaaaaagacaatgcgtaaaatttactaaaaaaaaagcagttttgcaactttctgcatttgctttt

Function

GO: NA

KEGG:

id description
K04218 SSTR2; somatostatin receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221928 lncRNA upstream 39302 40719727 ~ 40719973 (+) True G163877
TU221913 lncRNA upstream 42059 40668424 ~ 40717216 (+) False G163869
TU221915 lncRNA upstream 42059 40668424 ~ 40717216 (+) True G163869
TU221911 lncRNA upstream 89612 40664759 ~ 40669663 (+) True G163868
TU221904 lncRNA upstream 129231 40610141 ~ 40630044 (+) True G163861
TU221921 lncRNA downstream 1697 40767245 ~ 40769575 (+) True G163874
TU221935 lncRNA downstream 6975 40772523 ~ 40772821 (+) True G163884
TU221936 lncRNA downstream 7540 40773088 ~ 40774041 (+) False G163885
TU221939 lncRNA downstream 7540 40773088 ~ 40774312 (+) True G163885
TU221940 lncRNA downstream 9535 40775083 ~ 40775664 (+) True G163886
XM_007241020.3 mRNA upstream 488889 40264663 ~ 40270386 (+) True LOC103039568
XM_022679419.1 mRNA upstream 831357 39838037 ~ 39927918 (+) True LOC103034226
XM_022679430.1 mRNA upstream 938651 39814996 ~ 39820624 (+) True LOC111194742
XM_022679946.1 mRNA upstream 972029 39575089 ~ 39787246 (+) True reln
XM_007242439.3 mRNA upstream 1267199 39487766 ~ 39492076 (+) True LOC103038446
XM_022679420.1 mRNA downstream 141593 40907141 ~ 40910721 (+) True LOC111194726
XM_022679953.1 mRNA downstream 382796 41148344 ~ 41319019 (+) True rab26
TU220936 other upstream 3347306 37409992 ~ 37411969 (+) True G163105
TU220729 other upstream 4004588 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 8040000 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 8464246 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 8611085 32068862 ~ 32148190 (+) True G162017

Expression Profile