RNA id: XM_022679964.1


Basic Information

Item Value
RNA id XM_022679964.1
length 2952
RNA type mRNA
GC content 0.57
exon number 18
gene id LOC103029469
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 4296319 ~ 4510540 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCTACAGGATGGCGGCACCTCCTCCCGCTCTTCCCGCTCCTCCTGCGCGCGGCGGGCGTTAACAGCTCCTCGCCTCAGCTCGCGCTGCTCCGCTGAGTTCTGCCTGCGCGCGCACTCAACTTTGcttctgtattttttgtttatttcattttttttaaagggggaAAGGGGCGGAGCTTGAGTTCTTCCCGTGCGTGCACGCGACGCGCTCTAACCGGGAGCGCACCTGCCTCCGTCGCGTGCTCCAGTGATGTCCGCGGCTGCCGCTGCACCGGTGGCGATGCGTCCGCGTGTGCGCTCGTGTCCGCGCTCGCGCGCGCTGCTGCTTCTACTGCACGGGCTGCTCGTGGCCGGACTCCCGCGCGCCGCGCTCGCCTTCACGGAGGAGCCCGTGGAGCGCGTGGCCAAACCGGACGCCTTCTGTAGCTGGATCTTACGCGCGCAGCCGCAGGGCGCGAGGAAAGAGGGGCACAGCGAGTTCAGGCTGCGCGTGGAGGGGGATCCCGAACACTACCAGCCCGCGAGCACCTACAGAGTGACATTATACGCCACCAACCCCGCTTACTTCAGAGGCTTCACTCTCATCGCTCTGAAGGAGGGGAGGAACGGGGAGAAAGAGGAGGATTACGCCGGCAATTTCCAGATCATTGATGAAGAGGACACACAGTTCATGACTAACTGCCCGCCTGCCGTCACAGAGAGCACCCCTCGTAGAAGGACCAGGATACAGGTGTTCTGGACAGCGCCCCCATCAGGCAGTGGCTGCATACTACTGAAGGCGAGCATCGTTCAGAGGAAGATCATCTCCTTCCAGGATGAGGGTTCACTCACAAAGCGGATGTGTGAGAAAGAATCACTATATGGAGAATCCACAGATAAACCGCTGCTGGACTGCTGTGCTTGTGGAACAGCGAAGTACAGGGTCACCTTCTATGGGAACTGGTCAGAGAAGCTTCACCCCAAGGATTACCCCAGGAGAGCCAACCACTGGTCAGCCATCATCGGGTCGTCTCACTCCAAGAACTATGTGCTGTGGGAATATGGAGGTTACGCGAGTGACGGAGTTAAACAGGTGGCTGAGCTGGGTTCACCAGTGAAGATGGAGGAGGAAATTCGGCAGAAGGGTGATGAAGTATTGACGGTCATTAAGATGAAGGCCCAGTGGCCCGCCTGGCAGCCCCTGAATGTACGGGCCGCCCCTTCAGCCGAGTTCTCGGTGGACCGCTCACGGCACCTCATGTCCTTCCTGACCATGCTGGGTCCCAGCCCAGACTGGAACGTGGGGCTTctcattttttatattttgattgatTGCATAACTTTAACTAAgtctttttttccatattttttgcagTCTCCCAACAAGCCCACTGTTCCTCAGGAGAAGATCCGGCCTCTCACCAGCTTGGACCATCCTCAGAGCCCGTTTTACGATCCAGAGGGGGGTGCTATCACGCAAGTGGCCAGGGTAGTTGTGGAGAGAATCGCCCGCAAGGGTGAGCAGTGCAACATCGTGCCTGATAACGTGGATGACATAGTGGCAGACATTGCccaggaggagaaggaggaagACGACACTCCTGAGACATGCATTTACTCCAACTGGTCACCTTGGTCGGCATGCAGCTCCTCCACCTGTGAGAAGGGCAAGAGGATGAGGCAGCGGATGCTAAAGGCCCAGCTGGACCTGAGTGTTCCCTGCCCACATACCCAGGACTTTGAGCCCTGTATGGGGCCGGGCTGCAGCGATGAAGATGCTACAACCTGCATGATGTCAGAGTGGATCACCTGGTCTCCGTGCAGCGTGTCGTGTGGGCTGGGAATGCGCTCCAGGGAGCGTTATGTAAAGCAGTTTCCTGAGGATGGTTTCGCCTGCACTCTGCCCACCGAGGAAACCGAGCCCTGCACAGTCAACGAGGACTGCTCTCCGAGCAGTTGTCTGGTGACGGAGTGGGGTGAGTGGGATGCCTGCAGTGCCACCTGTGGGCTGGGAATGAAGCGTCGGGAGCGTATGGTGAAGATGCCCCCCTCTGATGGCTCCATCTGCGGGgcggaggtggtggaggtggagaaGTGCATGATGCCAGAGTGTCATACCATCCCGTGCCTGCTGTCTCCGTGGTCTGACTGGAGTGACTGCAGTGTGACATGTGGAAAGGGCACGCGAATGCGACAGCGCATCCTCAAATCCCCCGTGGAGCTGGGAGAGTGCACGGAGGAACTGGAGCAAGTGGAGAAGTGCATGCTGCCAGAGTGCCCTTCAGACTGTATGATGTCGGACTGGTCCGAGTGGTCCGAGTGTAATAAATCCTGTGGGAAGGGTCACATGATCCAACGGATGATAAAGATGGAGCCTCAGTTTGGAGGAGACCCGTGCGCCGAGACGGTCCAGAGGAAGAAGTGTAAGATCCGGAAGTGCAGCCAGGGCGGCGCCAACAGTGAGGAGAGGAAGAAACGCAAGGAAGCTCGCAAGAAGAGGAAGAACAAGCAGGGCAGGGAGGAGGGAGGGGATGAGCTGGCAGGATGCAAAATGAAGCCGTGGTCTGGATGGACGGACTGCACCAAGTTATGTGGCGGAGGAATCCAGGAGAGGCTTATGACGGCCAAGAAGAGATTCAAGAGCACGCAGCTAAACAGCTGCAAGGACAGGAAGGAGATCCGGGCCTGCAACGTCCATCCCTGCTAGGGTTGCCGAGGCTTACGGGAAGGGACACATTTCGGCACGGGGACTGGATTTAACCGGATTTAACAGGATTTAGCGGGATTTAGCTGGATTTAACGTCCATCACTGGCTCTCAGTGGTGTGGGGCACTTTGTTTAGGGATGGCATGGTGCAACagtttttgctcatttttatgtttcttattttttattaaatagaatatagaatagTGACCCACGGTTTGTTTGGGTGATTGATTGGAGGAAGGTGCTTAGAGTCGCTGTTAAAA

Function

GO: NA

KEGG:

id description
K24427 SPON1; spondin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211616 lncRNA upstream 26611 4269505 ~ 4269708 (+) True G156066
TU211612 lncRNA upstream 48280 4247822 ~ 4248039 (+) True G156062
TU211610 lncRNA upstream 50798 4245251 ~ 4245521 (+) True G156060
TU211600 lncRNA upstream 107530 4188506 ~ 4188789 (+) True G156050
TU211548 lncRNA upstream 290327 3960894 ~ 4005992 (+) True G156009
TU211645 lncRNA downstream 2280 4512820 ~ 4513705 (+) True G156095
TU211658 lncRNA downstream 39700 4550240 ~ 4550867 (+) True G156107
TU211670 lncRNA downstream 112088 4622628 ~ 4637290 (+) True LOC103030011
TU211673 lncRNA downstream 137088 4647628 ~ 4648023 (+) True G156121
TU211712 lncRNA downstream 357550 4868090 ~ 4868355 (+) True G156151
XM_022679496.1 mRNA upstream 172839 4008326 ~ 4123480 (+) True LOC103036857
XM_022679495.1 mRNA upstream 172839 4008504 ~ 4123480 (+) False LOC103036857
XM_022679497.1 mRNA upstream 173498 4008326 ~ 4122821 (+) False LOC103036857
XM_022679498.1 mRNA upstream 296857 3977752 ~ 3999462 (+) True LOC103036562
XM_007232420.3 mRNA upstream 364156 3929331 ~ 3932163 (+) True LOC103025196
XM_022679965.1 mRNA downstream 65128 4575668 ~ 4633700 (+) False LOC103030011
XM_022679967.1 mRNA downstream 167663 4678203 ~ 4738405 (+) True LOC103037478
XM_007243993.2 mRNA downstream 405688 4916228 ~ 4920871 (+) True LOC103030327
XM_007244015.3 mRNA downstream 1011146 5521686 ~ 5524043 (+) True LOC103036856
XM_007244014.3 mRNA downstream 1026194 5536734 ~ 5597788 (+) True cdyl2
TU211262 other upstream 1541207 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 3026940 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 3028124 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 3028124 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 3081656 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 646614 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 2861836 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 2876962 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 3090027 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 4059390 8569930 ~ 8570877 (+) True G157055

Expression Profile