RNA id: XM_022679983.1


Basic Information

Item Value
RNA id XM_022679983.1
length 6829
RNA type mRNA
GC content 0.47
exon number 24
gene id plch1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27805063 ~ 27965690 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCTCACAGAGGCCAGTCCGTTCCCGAGAATCCACCGCGGCTTTTCCCCGCAGCCCTGTTTCTTCAGCGACTCCCGTAGAGTTTGAATGGGAGGTGGTGCCGTGACCCTGCAGCTCCGTGGGACTGCGGCCAGTGGAGCAGTAAACACTGCTTTTCCATGCTCTCTCCCGGGCAGAGACAGACCCTGGAAACGTGCTGAGAAGTTCCGACAGAAGCTGCAATGCTTTCCTTTTTTGTGAACAAGGAATACTTCTGTTAACTGAGCGGAATAACCTGAAAAAACAGCCTGCTACTGAAGAGAAACACAAGCTATTCCTCTCTCAAATCCTCCATTACCACTCCATCACCAGCTGGTGGAGGATGGACCATCCCCAGTACTGCCGGCACTTCCTGGCGGACAACAGCACCCTTCACGTTGAGCGATGTATGAGTGTAATGCAGTCAGGCACTCAGATGGTGAAGCTGAAGAATGGCTCCAAAGGTCTGGTCCGCCTCTTTTACCTGGACGAGCATCGCTCCTGTATCCGCTGGAGACCGTCACGCAAGAGCGAGAAAGCCAAGATTACCATTGACTCGCTCTACAAGGTCACAGAAGGTCGTCAGTCGGATATCTTCCATCGTCATGCTGAAGGAAACTTTGACCCCGCCTGCTGCTTCACTATTTACCATGGGAACCACATGGAGTCTCTGGATTTGGTGACATCTAACGCGGAGGAGGCTCGGACGTGGATGACGGGACTCAGGTACCTGATGGCCGGCATTAGCGATGAAGACTCACTGGCCAAGAGGCAGCGGACCCATGACCAGTGGATGAAGCAGACGTTTGAGGAGGCTGACAAGAATGGAGACGGCTTTCTGAACATTGACGAGATTTACCAGCTGCTGCACAAGTTGAACGTCAACCTGCCTCGCCGAAAAGTGAAGCAGATGTTccagGAAGCAGATACCGATGACCAGCAGGGCACGCTAACGTTTGACGAGTTCAGCGTATTCTACAGGATGATGTCGTTAAGACGAGATCTTTTTCTGCTACTCATGTGCTTCAGTGAGAAGAAAGATCACCTGACTGCTGAGGAGCTCGGCAACTTCCTACGAGCGGAGCAGAAGATGACCAACGTGACGGCTGAGTACTGCCTGGAAATCATCGATAAGTTTGAAGTAACTGAAGAGAACAAGCAGAAAGGAATTCTGGGAATTGAAGGTTTCACTAATTTCATGCGGAGTCCTGCGTGTGACGTCTTTAACCCTCAGCATAACGAGGTTAATCAGGACATGGATCAGCCTCTGTGTAATTACTTCGTCGCCTCCTCTCACAACACTTACCTGACTGGAGATCAGCTCCTGTCCCACTCCAAAACCGACATGTACGCCTGGGTCCTGCAGGCAGGCTGCCGCTGCGTTGAAGTGGACTGCTGGGATGGTCCAGATGGTGAACCCATGGTCCAGCATGGATACACACTCACCTCCAAAATCACCTTCAAGTCTGTCATCGAGACCATCAACAAATACGCCTTCGTCAACAACGAATACCCAGTCATCCTGTCCATAGAGAACCACTGCAGTatccagcagcagaagaagattGCTCAGCATCTGAAGGAGATCTTTAAGGAtaagctggatgtgggagaacTCCTCCACAGAGATTCCAAACAACTGCCCAGTCCCAACGGTCTGAAGGGCAAGATCTTactgaagggtAAGCGCCTGCCTCCGTATCTCTCTGCGGACGCTGAAGAAGGGGAGGTGTCAGACGATGACAGTGCAGATGAGATCGAAGATGACTTCAAACTGAAGAACAGCACATCTAACGGTCCCACACAGCACATGGTTGAAACTCAGATCAGGAAGAAGCTGGACTCTCTGCTGAAGGAGTCTCAGATCGGTGATAAAGAAGATACGGACAGCTTCTCAATACGAGCCCTGCTCCGAGCTACACATGAGGGCCTGCACAAAAACCTGCGCAAGAATTCCAAAGAGGGCTTGAAGAAGTCTCAGAGTCGATCCTTCATCAGCAACCTCAAGCAGAAGAGGCACTCCAAATCGAGGCTGAAATGTCAGAGTGTTGACACAGATGAGGACGGGCAGCAAGAAGCATCCGGAAAAGAAGGAGGAGGACAGTTCAACAGGAGTGGGGGCAGGAGGAGGACGATGAAGCTCAGCAGAGATCTCTCTGATCTGGTTGTCTTTACCAACTCTGTGGTGTCTCAGGAGTGTCTGGATGAGGAAAATTCAACCATTCAGCAaAAATTTATTAGAGGggttgtccacaaacatttgatcTTATACTGTAGGGAAAGTAAAGAAATAATCTATTATATATTTCCTTTCTCCCCAGTGGCTCTGAACTATCAGACAGAAGGCCGTATGATGCAGTTGAACAGGGCGAAGTTCATGGTAAATGGAGGAATTGGTTACGTCCTGAAACCGCCACCCATGTGCAAAGGTTCCTTCAACCCCTACAGTGATGATCCTCTCCCTGCCTACCCGAAGAAGCAGCTGGTACTGAAAATCATCAGCGGGCAGCAGCTCCCTAAACCTCCGGACTCCATGCTGGGCGATCGAGGGgagATCATTGATCCATTTGTGGAGGTGGAAATCATCGGTCTTCCAGTGGACTGCTGTAAAGAACAGACACGGGTTGTTGATGATAACGGCTTTAACCCTGTTTGGGAGGAAACCCTGTCCTTTACCCTGCACATGCCTGAGATTGCAATGGTTCGCTTCCTGGTGTGGGATCATGACCCTATTGGCCGAGATTTTGTTGGCCAGAGAACTGTGGCCTTTAGTAGCTTAATGCCAGGTTACAGACATGTGTACCTGGAGGGGATGACGGAGGCATCTATTTTTGTCCATATCTCAGTGCATGATATCTACGGGAAGTGGAGTCCTCTAGTCCTCAATCCCAGCTATACCATATTGCACTTTCTAGGAGCTAACAAGGGTCGTCAGTTGCGGGGTTTCCGTGGCTTCTTCAGCAGGAGTTCCAAGTGTTCTGTGGACACACATACTGGTGTTCCACCGCGCAAGCGATCCATAACCAATCACCTGCTGCGCAGAACTGCTAGTGCACCTGCAAAGGGTCGCAAGAAAACCAAGATGGCGCTGTCTGAGACCTCGCTGGACAAGGACAAAAACGACAGCAATGGGGACCTCAAGCAGCAGGCTGTGGAGAAGAGAGTCGGTCCAAGAATGGCCCTCCAGCACCGGCCAGCCTCCATGCCCCTGGACAGGCTCCTACAGAGCAGACTTACCCTGTCTTCCCCTGAAACAGACGGAGCCGACCCTGGTGCTGACACAATAATTGATGCATTCCAATTGGAGAGACCCAGGTCTATTTCTCTGGATCTGCTCATCGAAACCTCTGCCCACAAAGACCCTGACGATGACGATGCCCTCATATATGAAGTCATCCAGGACAATCCCACAAAGTCTGAAGAAATGGGTGAGGCCTCATACTTCGTCATTGGCGGAAGAGGTGAATCTACCACTGACAATGACCTCCCTGAACATCTAGACCATCGCTTCATCCAGCAAACCAAAGCTGAAAATTTTACTGCTTTTCAAAGGCTAACGGATAGTGTCTCCAGTCTCTCGGATCAACCTGACTGTCAATTTAGCTTGCAAACAGACGGGCCCCAAAGAGACATTTCCAAAAATATCAAAGCATCCAACATGGCTGCCCATTCTACTTCCTCCTTTTCAGGGGCTCATGCCCAATCTCCACTTCCTTCCACAGTGTATCAGCCTAACCAGCAAGGTCGAATGTCTATTCAGGACAGTGCCCTTTCCCGCCTTATTGATGCTGTCTCCTTCTGCAATGATTACGACACGTGTGGGTCCATATCAGCTCTTATAGATCAGTTTGAAATGACCAATGAACAAAGTAAGCTCAATCTGTCCAGTGGCTCAAACCAGACTTCTAAGTCTTCTAAACTGTCCATcccacaaacaaacaacaaactttCCAGCACTCCACTGAAGATTATACAAGAATCCACTCAAAAAACATCATGGCTTGCAGATAGATCCGTCCTGTCTAGTCCTGAAACCACTGAACCAGCTGTTTTTACAATTCTAGACGAAGAAGTGCTCTCTCCTGTCCCTATTTACGATACTATTGACCATACCATTGTCTGTAATGATTCAGAGACCAACTTGACAAAATGTGTGACATCTATTGGTAGCCGAGGTTCCTCCCCAAAATTGTTGCCTGTTGAAAGGGCAAAAGACGGTAACAGTGCCTGGATACCGTATAGAGATGAACACTATAAAGACCACCACCAGTCTACTAGGTCTTCCAGTATCTTGGCATGTGGAGGTTACAGAGAAACCTCAGTAAACAGTACAGTCTCCGACCGCTTTCTTATGTGTCAGGGTTCAGCTAGCAGTAGCTTGATGGAAGTGGAAATCAACGTGGATGGCGATCCTCTGGATACTTTGACCCTGGCATCCTCATACCAAGACCGTCAGTGGAGCAGTGATCTAGGACTCTCAAACCAGCTTTCTCCTCTCCACAGACTATCATATAAACCTTCATCCTCAATCCATAATCCCTATATACCTTCTCCATCAAAATCCTTGTATAAACCCCCTGGCATTGCCCACTCTGCAGAGTCATCACCCTTTTATAGGCCTTGCCAGCGCCCTTCACCACACAAGCCTCTTGTCTCCAGCACTTTGCATCAGCATGGCCATGCCATTACCAAACCCCAGTCAGACCCCAAGTTTTTCAGCTCTGCTAAATTTCAGTCTGCCAAGTACAACAATGACTCTTCCAACAACAGGCACTGGGAGACTAGGGAGAGGAATGACTTGACCTGTAGGACAGAGCACTTGCAGAATGGGTACTCGTCTTCTGACTGTCTTCTAAGGACTCAAGTTAGTAACCCTCCACCAGCGAGGGATTCCTACTTGCCGGTCTCTGATTGTGATATGAAGTACAGTtctgtggaatatggagctagctTTGCTCCTCCAAGGCAATATTCCATGCAACAAAGCCAAGCCTTAAAACCAACCCCTCCTGAGGGCTACAATGGAATCTACCTTCCTCAGACTCCTAGTCCATGTAAGTCCAAGAGTCTGGGTGACTTGACATCTGAGGACATCTCTTGTAACTTCCAGAGCAAGTACAAGGTCATCAGCCGCAGTTTCATCACTCCTGCCATGCAAGAACAGAGACGGAAAAATGGCTTGGCCAAACGGCCAAACTCTACTGACCCCTTGACTGAACAACTTCGCAAACTTGTGACATTGGAAGAGACGGATTGCCACCGTCCTTTCCACAAGCAGTTCCAACACACTCCCAAGCCTCTGTCAGTGCTCCCTCCAGTTCCAGCCAGTTCTGCAGTTTCTACAGAGGACCAGGAGGACCCTCCTCCATTCCTTTCAAGAAGGCTATCCTCTCGAAGTCAGAGTCGGGTCCGCCACATAGCCAGCCGTGCTAAAGAGAGACAACAGGAAGCACTCAAACGACCTGTTGGGGGCAGCTCTGAGGTGGTGCTTCGCAATAAGCCAGTTTCCTCTCAAAATCTCCTCATCAACAGGCATTCTACCGGTTCCTACATCGCCGGTTACCTGGAGCAAGTGGGGCCAGAGGATCGGGGCTTACCTGAGGGTTCCTGCACGACACTCCATTATGGCTACAGAGATCAATGTTATGCTGATGACTCTGTGCTGCCTTCCGATTCCTGCCCCACCTCCGAACCTGAGGTTTACTTCTTGCTGAGACTTTGACTCTCTGTCTTGCCTGTACTTGTACTTGCTACCAGTGTGATTTCACTTCTAGTTAGAAACAGTTTATCAGTCTCTAAGGTACTAAGCTACTCACACTCTACCAGCTTATTGTCGAATATAAAGTGCGCTTTGAAGTCCAGAGACTAAATGACCTAAATCAAAGCTTCCAGCGTTGTGTAAATAGTACAGCAAATCCTGATCAGTAAGTTTTTGGTCCTAGATGCACTACACCAAATTGCTACTGTATCAAGCTACTTTTATCTCTGTCCATCTGAACCATgttatgtgtgtaaatgttctTGTTTGGAAAAAGTATTTactgtaaaggaaaaaaaataaccagGCTTACTGAGGGttgttttttaaagacattttgtcTGGGTCTTTGATTTGTCTCTTTCTAAATGTCAATCAACCAATGATTCTTAGAGGGGCCTCTATTTTAAAAGGTATCTTTTCTTCAGTCTTCCTGCAcctctgttttgttatttgtagGTCTGTGTTTGTTGTACATATATTGGCGAATTTGCCTTTATTTAAGGCCCTATGGGTTTTCTGTTTGAAACTGAACTGTGGTGTTACATTTCTGAAACAGCATGTGGACCGTGGACATGTTGAGCATGACTATGCACAGATGGGTAGATGTATCTGTGCCCTGATTTTGCATAGAACTCTTTGCTTTATTCCATGCAACTCACAAGAGAAACCTGCCTGCTCAGATCTGcttgctctcactctcttagGCATGCATTTTCAGATTAATATACACTGCTTcgtaatcagaaaaaaagaactgtgaggttaaagttttatttttgtaattgctttGATACAGATTtccaaaaagaagaagataaatggtctaaatatttgttttttttctttccttttaaaaAGGGAGCACTGGACTGAGAAGTCACAGTTATGGGTTACACACTGGACAAAGCAATGgttttgttgttattgttttttttttttgttttttttctgtgttaaagGGTACCCAGATAgtcattctttttattattgctcaTCGAATGTCTATGAGCATTTTCCTACCAATGCAATAAAATTCTGTTTGACATTAAa

Function

GO: NA

KEGG:

id description
K19006 PLCH; phosphatidylinositol phospholipase C, eta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218294 lncRNA upstream 9420 27785032 ~ 27795643 (+) False c18h3orf33
TU218293 lncRNA upstream 21874 27780854 ~ 27783189 (+) True G161115
TU218251 lncRNA upstream 177641 27602859 ~ 27627422 (+) True G161080
TU218250 lncRNA upstream 218293 27586529 ~ 27586770 (+) True G161079
TU218231 lncRNA upstream 403876 27400961 ~ 27401187 (+) True G161060
TU218351 lncRNA downstream 64923 28030613 ~ 28035195 (+) True LOC111194734
XR_002651201.1 lncRNA downstream 65169 28030859 ~ 28032190 (+) False LOC111194734
TU218353 lncRNA downstream 65708 28031398 ~ 28032184 (+) False LOC111194734
TU218493 lncRNA downstream 400478 28366168 ~ 28394028 (+) False G161243
TU218490 lncRNA downstream 422961 28388651 ~ 28392768 (+) False G161243
XM_007231545.3 mRNA upstream 8559 27784896 ~ 27796504 (+) True c18h3orf33
XM_015600826.2 mRNA upstream 26597 27762391 ~ 27778466 (+) False slc33a1
XM_007231546.3 mRNA upstream 26597 27762407 ~ 27778466 (+) True slc33a1
XM_007232086.2 mRNA upstream 375282 27423510 ~ 27429781 (+) True ssr3
XM_022679793.1 mRNA upstream 601153 27202494 ~ 27203910 (+) True LOC111194784
XM_007231544.3 mRNA downstream 3368 27969058 ~ 27977682 (+) True LOC103040346
XM_007231561.2 mRNA downstream 105801 28071491 ~ 28077732 (+) True LOC103045576
XM_022679804.1 mRNA downstream 207920 28173610 ~ 28177986 (+) True LOC107196882
XM_022679806.1 mRNA downstream 208145 28173835 ~ 28177986 (+) False LOC107196882
XM_022679803.1 mRNA downstream 214992 28180682 ~ 28184907 (+) True LOC103044051
XR_002651269.1 other upstream 687852 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 897436 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 1049750 26749379 ~ 26755313 (+) False LOC103021732
TU217233 other upstream 3685238 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 4950982 22853412 ~ 22854081 (+) True G160134
TU218548 other downstream 656438 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 780006 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 1105130 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 2909348 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 2909428 30875118 ~ 30878312 (+) False hmgn2

Expression Profile