RNA id: XR_001518593.2


Basic Information

Item Value
RNA id XR_001518593.2
length 2442
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id LOC107197499
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7841657 ~ 7844823 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAAATAGAGAGGCGAGAGAGGAATCTGCCTCTTCTATCCTACAGACTCGTCTGATGAAGTAGCTGGAGATCTGACTGCAGTTCAGCCTGCAGGTTCCTGGATCCTGATGGCCACTGCTACTCTGATCAACCTGAGTACTTCTTAAGGATTTCTGGGACATGTAGTCCACTGCTTGCATTTCTTTTTAtctgaggaggagaggagaagaaccCATCTGCCAAGGGATTCGGGCACTCGGGCCTTCTGCCCTGTTCTAGTAGACGCTATGTTGTGGCCTCCTGCCTTATGGGTGGGATGAACACCACACAGCAACTTGGACAGGGTTCAGTGGGCCTGCAGTGGACAGCGCCAGGTCTACTCTGACCTGCCAGCAAGGCATTAGACGCTAGAAGCAACCAAACAGACATAAGTCTACCACACCGCTCGAGGAGCATACACTTGATGGAAGAAAAGCCGACACAACTTTTCCTACTTacccttttcccttttttttatttttgttcggCTTCTGGTTGTCTGTTGCTTGGTTGGCAGGTTCTGGGGATGGCCTGCTGGAAAATAGTGAACAAcccattgttttattgtttttaaggcTGTGCGCAATtttctgttaaaataataaaaagaaaataataaaaattgcaaaTTTATGTCAACCAAATTTATTCTACTGTTTTTTCTGAATTATTTCAAATGGTACCATTTATTATCATATTAGTTTTAACACCCCAATAACAATAACACCccaatgaagtaaaaaaaaaaaatctgatttgtccCAAGAAGGTCAATCCTCATGTCATcactgtgtttattgtgtttacaCACTGATACTAACAAGATGTATTTCAAAGGATCAGTTGTCCAAAAAATTGTCatgtgggtgtgtttgtttgGGCAGGATTTACCTAAAAAGCAAGTGTACAGTGTTAAACCTCAGTAAACAACATCAAGAGGTGGGATCTAAAATTGGGCAGAAAGTGAACAATCAGTCTAGAAGTTTGTGTGTTGGAACCAGCAAAAATGGGCAATTGAACAAATCTGAGAAACCGTGACAAGAGTCAAACTAACTGAAATGAAGTTGATTAAAACATGTCTAAAATATCAGACAGGTATTAATAAGGGGTTACTCTTCAATTCATGTCTGTATGCagttctttaaaataagactagtGAACCCTGTAATAGGTTCATGAGTATCTAGGAGGGCTTATTAATGCTTATAAAGGCCCCACCTCACAACTGACACTTACAAGACTTAACGGTTCTgctgctaacatactttttgcTGCTAGGTAATACAAGACACCATCAAATGTATTGTAAAGTCCAGTCTATGAAAGATCAGAGCTATTTTGGCAAGCTAAAGATGTACAGAATAATAGGTAGgtcattttaatattatggctgatCTGCCACAGTGTTGAGAAAATGTAGTTAATTTGCTTGTTTGTGTAGATTTTTACATCAATGATTTGCAATGATTGCAAGTTTCTGATACAGTTCTTTTTTGTCCTTGTTTATCAATCTATCTTTTACAGAAATGAAGATCTAAAAGCATTCATAGAAAATCAGAAGGAGGGCAAAACTTCTGAACAAAATCTGAAGTGAAACAATAGAGATCTATCAGGAAGCAGAAACCGAAACTTAGGCCTTGGCTGTAAACCACATAAACTGAAACTTAGCCCTTGGCTGTGTGCCACGTACGTCCCCTCATGTGATGTAAGAGATGGGCGGGAGGACAGAGAGGGTAAatagagagcagagagaggaaTCGATCTCTTCTATCCTACAGACTCGTCTGCTGAAGTAGCTGGAGGTCTGACTGCAGTTCAGCCTGCAGGTTCCTGGATCCTGATGGCTACTGCTACTCTGATCAACCTGGGCACTTCTTAAGGATTTCTGGGACATGTAGTCCACTGCTTGCATTTCTTTCTTATCTGAGAAAATCCCATCTGCCAAGGGATTCGGGCACTCGGGTCTTCTGCCCTGTTCTAGTAGACGCTATGTTGTGGCCTCCTGCCTTATGGATAGGATGGACACCTCACAGAGTCTCTGGTCAAGGTTCAGCGGACCTGCAGTGGACAGCGCCAGGTCTACTCTGACCTGCCACTGAAGCACCAGACTCTAGAAGCAACCAAACTCTCAACAAAAACAAAGCCGACAAAGAACTTCCTTCCCCCATCCATTTCCCCTTTCCCTTTTGGTCGGCTTCTGGTTGTCTGTTGCTTGGTTGGCAGGTTCTGGGGATGGCCTGCTGGAAAACATTTAACAACCCTTTGTAGGAGTGTGTTATTTCAAACGGAAATATTTCTTTTGGAAATATTTCCGTTTGTATTAACCCTCACTTGCAGTTCTTTTTAAGGCTGTGTgcaattttccaaaaaaaaagtttttaaacaaaaaaaatctaataaaaatagcaaaactaTTTGAACTAA

Function

GO:

id name namespace
GO:0048882 lateral line development biological_process
GO:0048884 neuromast development biological_process
GO:0048925 lateral line system development biological_process
GO:0042611 MHC protein complex cellular_component
GO:0042612 MHC class I protein complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212769 lncRNA upstream 176 7836755 ~ 7841481 (+) True G156916
XR_001518591.2 lncRNA upstream 2024 7838726 ~ 7839633 (+) True LOC107197497
TU212771 lncRNA upstream 3885 7836755 ~ 7837772 (+) False G156916
TU212683 lncRNA upstream 85993 7752203 ~ 7755664 (+) True G156856
TU212684 lncRNA upstream 85993 7752332 ~ 7755664 (+) False G156856
XR_001518589.2 lncRNA downstream 1660 7846483 ~ 7849878 (+) True LOC107197493
TU212780 lncRNA downstream 1792 7846615 ~ 7860640 (+) True G156917
TU212909 lncRNA downstream 511395 8356218 ~ 8357077 (+) True G157019
TU212912 lncRNA downstream 516697 8361520 ~ 8361750 (+) True G157022
TU212918 lncRNA downstream 587791 8432614 ~ 8438269 (+) True G157027
XM_007244089.3 mRNA upstream 5931 7830102 ~ 7835726 (+) True LOC103033491
XM_022679547.1 mRNA upstream 13095 7824010 ~ 7828562 (+) True LOC107197496
XM_007244092.3 mRNA upstream 43648 7783636 ~ 7798009 (+) True LOC103034665
XM_022679545.1 mRNA upstream 71354 7755742 ~ 7770303 (+) True terb1
XM_007244081.3 mRNA upstream 114707 7720499 ~ 7726950 (+) True LOC103030643
XM_015604460.2 mRNA downstream 7102 7851925 ~ 7860510 (+) True LOC103032733
XM_007244087.3 mRNA downstream 17249 7862072 ~ 7866578 (+) True odf3b
XM_022679549.1 mRNA downstream 30201 7875024 ~ 7880960 (+) True rabl2b
XM_022679551.1 mRNA downstream 446339 8291162 ~ 8301780 (+) True LOC103028908
XM_007233848.3 mRNA downstream 578843 8423666 ~ 8432053 (+) True arsa
TU212659 other upstream 234989 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 410089 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 437101 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 2684257 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 5086545 2738361 ~ 2755112 (+) True G155776
TU212948 other downstream 725107 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 2096006 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 4517628 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 4890809 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 5889122 13733945 ~ 13736102 (+) True LOC107197649

Expression Profile