RNA id: XR_002651207.1


Basic Information

Item Value
RNA id XR_002651207.1
length 297
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC111194744
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18413361 ~ 18413950 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTATTGCTTCCTGGTACCTTCCAGTGAATGGCTTCAACACTGAGACCATGAACCGTGGCcaattttttcctttcttcttagACTATAACTTTGGTAAACCTTTCTGTTGCTTTCTGGTACCATCTAGTGGATGGTATGAACACTGCAGCTGCTTTGTTCTCCAGCACAAACAAGCTTCTCGCACTGCAGTGCATCCAGAAACATCTCCAAAAAATTCTTCTCATCCTTTgtataaaaatcttaaatatcTGTATTCCttgacattttaattaaataagtaGTAGATCAATTCCCTA

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215889 lncRNA upstream 1425 18411312 ~ 18411936 (+) True G159272
TU215773 lncRNA upstream 284932 18114005 ~ 18128429 (+) True G159184
TU215770 lncRNA upstream 303822 18108163 ~ 18109539 (+) True G159182
TU215695 lncRNA upstream 416633 17995698 ~ 17996728 (+) True G159129
TU215692 lncRNA upstream 427497 17983888 ~ 17985864 (+) False rapsn
TU215891 lncRNA downstream 14205 18428155 ~ 18428426 (+) True G159274
TU215933 lncRNA downstream 94461 18508411 ~ 18508695 (+) True G159298
TU215998 lncRNA downstream 199214 18613164 ~ 18615494 (+) True G159344
TU216004 lncRNA downstream 216520 18630470 ~ 18630853 (+) True G159347
TU216006 lncRNA downstream 238500 18652450 ~ 18652676 (+) True G159349
XM_022679691.1 mRNA upstream 147558 18261165 ~ 18265803 (+) True LOC103028633
XM_007255961.3 mRNA upstream 248637 18134717 ~ 18164724 (+) True cftr
XM_015607513.2 mRNA upstream 377665 18030488 ~ 18035696 (+) True LOC107197792
XM_007255967.3 mRNA upstream 383356 18023904 ~ 18030005 (+) False wee2
XM_022679692.1 mRNA downstream 1577 18415527 ~ 18432488 (+) False arpin
XM_015607578.2 mRNA downstream 1577 18415527 ~ 18425998 (+) True arpin
XM_022679695.1 mRNA downstream 1578 18415528 ~ 18435115 (+) False arpin
XM_007256240.3 mRNA downstream 10300 18424250 ~ 18435115 (+) False arpin
XM_022679696.1 mRNA downstream 12443 18426393 ~ 18435115 (+) False arpin
XR_002651250.1 other upstream 1224110 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other upstream 1224110 17177675 ~ 17189251 (+) True zwilch
trnal-cag_11 other upstream 1649753 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 2033538 16379259 ~ 16379823 (+) True G158779
TU214760 other upstream 3277163 15133947 ~ 15136198 (+) False LOC111194769
TU215929 other downstream 112436 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 112436 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 112436 18526386 ~ 18576437 (+) False necab2
TU216418 other downstream 1771566 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 2322648 20736598 ~ 20737049 (+) True G159728

Expression Profile