RNA id: XR_002651240.1


Basic Information

Item Value
RNA id XR_002651240.1
length 410
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC111194766
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 11493615 ~ 11501536 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGCTGTTAAGCATGGAGCGAGATGGAAAGACCAAAAAGACTTCTTCCTCAAAAATATGTGGACAATGAAGAGACAGGTGTGACCAAGGATGAAGCATCAAGACAAGAAAGAAGCAGGTCAAGCAGCCAAGttgagGTGGCAAAGCTAAAGGTGGAAATCAAATTCCTACATGATGAATGCACAGTTTTGAAGGAACATGTGGACAAATTAACATCTGTTCCTGACATGGCTGCAGGTccttcagGATGGAGAGGGGCAGAAGATTCCGCATCCTGCTTTCTGATAGacgaaaaaaaggaaaagcacaagaagaagaagatcaagaagaacaaaaaatataacattttacctAAAAGAAACATATAATCAATGatgattgtaaataaataaataaataagtttaatgTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213871 lncRNA upstream 1129 11492239 ~ 11492486 (+) True G157766
TU213869 lncRNA upstream 4055 11488060 ~ 11489560 (+) True G157764
TU213866 lncRNA upstream 25476 11467926 ~ 11468139 (+) True G157761
TU213791 lncRNA upstream 179012 11310015 ~ 11314603 (+) True G157703
TU213619 lncRNA upstream 350146 11132366 ~ 11143469 (+) False hipk2
TU213884 lncRNA downstream 9907 11511443 ~ 11512521 (+) True G157771
TU213886 lncRNA downstream 10449 11511985 ~ 11512521 (+) False G157771
TU213888 lncRNA downstream 14324 11515860 ~ 11516109 (+) True G157773
TU213897 lncRNA downstream 90428 11591964 ~ 11592991 (+) True G157782
TU213896 lncRNA downstream 92497 11594033 ~ 11597529 (+) True G157781
XM_022679613.1 mRNA upstream 31970 11450922 ~ 11461645 (+) True LOC103046882
XM_022679602.1 mRNA upstream 199942 11269015 ~ 11293673 (+) True nup205
XM_007250962.3 mRNA upstream 227295 11231961 ~ 11266320 (+) True fam107b
XM_022679616.1 mRNA downstream 529600 12031136 ~ 12333915 (+) False LOC103032257
XM_022679617.1 mRNA downstream 530052 12031588 ~ 12333915 (+) False LOC103032257
XM_007250499.3 mRNA downstream 718381 12219917 ~ 12333915 (+) True LOC103032257
XM_007250498.3 mRNA downstream 838470 12340006 ~ 12362527 (+) True LOC103031933
XM_007250504.3 mRNA downstream 1013926 12515462 ~ 12524112 (+) True utp4
TU213377 other upstream 1551810 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 2922738 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 3886947 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 4062047 7372376 ~ 7431568 (+) False LOC111194759
TU213920 other downstream 860915 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 1234096 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 2232409 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 3548686 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 3626832 15128368 ~ 15136198 (+) False LOC111194769

Expression Profile