RNA id: XR_002651247.1


Basic Information

Item Value
RNA id XR_002651247.1
length 2476
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id LOC111194770
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15969286 ~ 15986748 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaggagagagaggtgggGAATGGACGAAAAAAGTTTTACTTTTATAGTAAAAGGCGCTGTTATTTCCTGCAGAGTTACTGGAACTAACAGCTGGATACAGCCCTGTTTGTGAAGCTGGAGATGCGACCAGCGGCGCGGGAGTGTGGCATACCCGACTCCAGAGCTCCAGAGGACGCTGAGAGGGATTTATTGGAGGTCAAGGAAGTGATGCAATCTGGAGATgacattcctgggaaacccttgctgtgtgtgggcgaTCATTATCTTGCTAAAAAATACCAGCTGCAAGTCCTGTTTTGAGAGTGGGCCGATTTCAAACTGACCTTCACCTGCTGAACCCTGAGCTGAAGACTCACCTGCAGAGCCCACACACCATCTGCTGAATCCACACAGCTTTAATTCTACACACAGGGCTCTACAGTCACTGTGTGCTCTGCTGCCACTTGTAGGAGTTGCAGGAGAAATGAACTGTAgataaatgttctcacacagtTGTAGCTGCACCATACTTGCAGTGTAGGAATGCAATGATCTTTGATTCTTATTAagattcttattattatttagttgcACATTTGTTCTTCTATCCAGGTCAAAAGCTGACCTATGCAAAATGCTCTGTGCTTAAAATTAGAATTTCTATGACAAAAGACTGTTTCTAATTAAATCTAGAGATGCACAGTTTATggccaaaataataaaaaatactgagaACTTGACAAATTGTTCATTCatattaacacttttttaaatgttgctaAGTTATAAAGAGCTTCACTCATGCAGGTTGCAACTTGGACaagtcattaaaaaataatttgttccATATAAATTATTCCATCTTAAATGATTATTTGAcattttggctgaatatttttggttaCTAAATATTTGGTGCCTCCTTAATACATAAACattgcacattttaaaagtattataaCCTTTCAGCAGCATCAATTAAGAATACTTGTGCAACTACTTCACTTactatgattattaattatgtttataaCATCAGTAATGCAGGCTAGTTAAAATGAGGTTGCTATTGTCTGTCACTATCCCTGAAAGGGAATGAATAAAATACACATGTACTGAGTTAAAgatgaatgttttttaaaagcctgaagaatataatattaatttgaaGACAGTCAAAAAATGTTTAGATACATATACAGTGCTCTGAATACATCTGTGAATGTTAAGCTACTTATCTGGACACCAattatttttgaaagaaaaaaaaaaccccactaCAATtagaatacatttataaaatcagttcatattaatattaacagtacAAATGATTTAAGCGCAGTATTTACAGTTCCCACCCAACACTCACTTTATCTAATCACTCctttattaaagtaaatcaggtgagctgctggtggagctgAAGTCCATAAAGTGGCTGGAGTTCAAACAATGTCCCAGTAACACATTCTAACCACTGATTATTACGAatgtttattcatatttattctgttattatGTGTTTTACAGGGTAAGTGAGAACTGCTAAGAAGAAAGATTTTTATGGAGTAGTTAAAACTTTTGGGTAGTACTGGATTACATACTCTTATGTTTAGGATCTGTTTTGGATGCATTTGTGGAATTGAACCTttctgaatgtgtgtgaatAACCACAAGAAAAGACTTAAAATGCCAACAGTACAATACAAAGAGTCATACTGCTCATCTAGTGTTGGTGGAGGGTAAAGATTGGTGAGTGTTTTTCAGATGTTCAACAGCACATTGTATTCCCTATATACTTTACAATTAAACTCCCACAAAGCATCGCAAAATGACAATGTATGCAAGAATTTCCAATGTATACCATAATGCACTGTGGTGGTCCTCAGAACCGCACAAACAAAGATAGTTTGGTCATTCCCTAGTCAGTTCACTATATAGAAAATGCTGCCTAGTGAATGAGTTAATAAGCAAACCATTCTTAACACAGCTTGTCTAATTGCTGTAGAAAAGTAAAAGTGCCTTTCCACTTGTCTACTAAAATGGCTCTCATATAATAATCTTTTGGATTGTGTATCTCTTGGTGAGAGACCACCAACATATATCTAATACTATAATCATACATACATGTATAATCATTACATTCTCACAAAAAAGTTTCACTTTCACAACTACTTGTAGGCCAGTTATTTTCACAAATGAGTATCTGAGCATTTTTTGATGAATCAGTGTATTAATGTTCCCTTAAAAGTATGTTAAGTAGattatgagtaaaaaaaaaaattgggattaGTGGCAGTTATTATGTTTAAGTAATACTAGCCTATCATCACCTATTGCAAAGTAAAGGTTATCTTAGGtaagaaatgtttttgatgactGACTTAATTTGTGGTTTGTGATGCATTGCAGACATTTATGTTGTTTTGCTAATCTATTCCTTGAAGTGTTTTAaagggataaaaaaataaaataaaatactatgtCTTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215049 lncRNA upstream 27136 15936078 ~ 15942262 (+) True G158644
TU215046 lncRNA upstream 60107 15909003 ~ 15909291 (+) True G158641
TU215045 lncRNA upstream 61498 15907153 ~ 15907900 (+) True G158640
TU215029 lncRNA upstream 161865 15807319 ~ 15807533 (+) True G158627
TU215023 lncRNA upstream 193240 15775424 ~ 15776158 (+) True LOC103041352
TU215234 lncRNA downstream 304028 16290776 ~ 16291007 (+) True G158776
TU215247 lncRNA downstream 556130 16542878 ~ 16561010 (+) False siah1
TU215250 lncRNA downstream 587936 16574684 ~ 16575374 (+) True G158786
TU215262 lncRNA downstream 601179 16587927 ~ 16588472 (+) True G158793
TU215287 lncRNA downstream 667388 16654136 ~ 16725205 (+) False st3gal2
XM_007249189.3 mRNA upstream 1308 15960149 ~ 15968090 (+) True LOC103038143
XM_007249190.3 mRNA upstream 1308 15960149 ~ 15968090 (+) False LOC103038143
XM_022679660.1 mRNA upstream 1308 15960598 ~ 15968090 (+) False LOC103038143
XM_007249192.3 mRNA upstream 9992 15947586 ~ 15959406 (+) True rspry1
XM_007249195.3 mRNA upstream 36932 15878898 ~ 15932466 (+) True cpne2
XM_022679976.1 mRNA downstream 249432 16236180 ~ 16236963 (+) True LOC111194834
XM_007249185.3 mRNA downstream 287931 16274679 ~ 16285044 (+) True cbln1
XM_015604415.2 mRNA downstream 520148 16506896 ~ 16511309 (+) True LOC107197482
XM_007249184.3 mRNA downstream 525586 16512334 ~ 16530595 (+) True n4bp1
XM_007249183.2 mRNA downstream 556146 16542894 ~ 16571458 (+) False siah1
TU214761 other upstream 833200 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 833200 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 833200 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 918680 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 2233296 13733945 ~ 13736102 (+) True LOC107197649
TU215237 other downstream 392511 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 776778 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 1190927 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 1190927 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 2539638 18526386 ~ 18576437 (+) True necab2

Expression Profile