RNA id: XR_002651265.1


Basic Information

Item Value
RNA id XR_002651265.1
length 344
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC111194780
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22622346 ~ 22622773 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTACAGTCCAGTGTTTTGAGGAAGTCTCCAGTGTGATTTTTGTACAGTCCAGTGTTTTGAAGTAGTCTCCAGTGTCCTTTCTCGTACAGTCCAGTGTTTTGAGGTAGTCTCCAGTGTCCTTTCTCGTACAGTCCAGTGTTTTGAGGTAGTCTCCAGTGTCCTTTCTCGTACAGTCCAGTGTTTTGAGGAAGTCTCCAGTGTGATTTTTGTACAGTCCAGTGCTTTGAAGTAGTCTCCAGTGTCCTTTCTCGTACAGTCCAGTGTTTTGAGGTAGTCTCCAGTGTCCTTTCTCGTACAGTCCAGTGTTTTGAGGTAGTCTCCAGTGTCCTTTCTCGTACAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216895 lncRNA upstream 40175 22576918 ~ 22582171 (+) True G160041
TU216905 lncRNA upstream 60444 22559836 ~ 22561902 (+) True G160051
TU216857 lncRNA upstream 243856 22308905 ~ 22378490 (+) True G160015
TU216784 lncRNA upstream 345397 22272697 ~ 22276949 (+) True G159961
TU216761 lncRNA upstream 443785 22178204 ~ 22178561 (+) True G159939
TU216970 lncRNA downstream 25863 22648636 ~ 22648919 (+) True G160096
TU216972 lncRNA downstream 27058 22649831 ~ 22650066 (+) True G160098
TU216981 lncRNA downstream 47343 22670116 ~ 22672904 (+) True G160106
TU216991 lncRNA downstream 98435 22721208 ~ 22721760 (+) True G160115
TU217006 lncRNA downstream 122584 22745357 ~ 22746298 (+) True G160129
XM_007251005.3 mRNA upstream 229771 22302354 ~ 22392575 (+) True LOC103028656
XM_007251004.3 mRNA upstream 334705 22282694 ~ 22287641 (+) True snrpa
XM_007251016.2 mRNA upstream 362275 22234292 ~ 22260071 (+) True itpkc
XM_022679746.1 mRNA upstream 389291 22205158 ~ 22233055 (+) True LOC103027502
XM_007235619.3 mRNA downstream 99947 22722720 ~ 22727446 (+) True rnf7
XM_007235620.2 mRNA downstream 105760 22728533 ~ 22736629 (+) True LOC103026853
XM_022679750.1 mRNA downstream 190762 22813535 ~ 22816398 (+) True LOC103027133
XM_007235622.2 mRNA downstream 269699 22892472 ~ 22893301 (+) True LOC103027426
XM_022679757.1 mRNA downstream 437802 23060575 ~ 23094876 (+) True LOC103030816
TU216738 other upstream 469561 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 1610552 21009302 ~ 21011794 (+) True G159748
TU216494 other upstream 1885297 20736598 ~ 20737049 (+) True G159728
TU216418 other upstream 2435427 20185516 ~ 20186919 (+) True G159666
TU215931 other upstream 4045909 18526386 ~ 18576437 (+) False necab2
XR_002651264.1 other downstream 66 22622839 ~ 22623307 (+) True LOC111194779
TU217011 other downstream 230639 22853412 ~ 22854081 (+) True G160134
TU217233 other downstream 1496356 24119129 ~ 24119825 (+) True G160306
TU217966 other downstream 4126606 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 4282471 26905244 ~ 26907627 (+) True G160919

Expression Profile