RNA id: XR_002651279.1


Basic Information

Item Value
RNA id XR_002651279.1
length 795
lncRNA type inter_gene
GC content 0.48
exon number 5
gene id LOC111194802
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28643321 ~ 28652309 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGGAGTCCAAAGCCTCGATGTGTTTTATGGGGAACAGTTATTAATATTGGGTCAAATAATCCAGTATTTCTTCACTCTGGTGCTGAAGGTCCGCTGCGCTGCTCTTTACTGTGTTTCCCCTTTACTCTGTTTTCATTTAAAGCCCCTCAGTCTTAAAACAGCGGCACTAGCGGGCCTCCAGCGGGCCTTCAGCACCGATAGTGATTATTACCCTGCCGGATTAGATTAGAGCAGCACGGCGGAGCTCTGTAAATCCCGGTGACGCTGCAACTGGATTTTATAAAGATATGAGAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGCCCAGTTCCAAAAGACACAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCAAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218493 lncRNA upstream 254477 28366168 ~ 28394028 (+) False G161243
TU218490 lncRNA upstream 255737 28388651 ~ 28392768 (+) False G161243
TU218491 lncRNA upstream 255737 28388651 ~ 28392768 (+) True G161243
TU218351 lncRNA upstream 613310 28030613 ~ 28035195 (+) True LOC111194734
XR_002651201.1 lncRNA upstream 616315 28030859 ~ 28032190 (+) False LOC111194734
XR_002651282.1 lncRNA downstream 243 28652552 ~ 29213664 (+) True LOC111194803
TU218566 lncRNA downstream 15864 28668173 ~ 28764043 (+) True G161302
TU218583 lncRNA downstream 234133 28886442 ~ 28886800 (+) True G161314
TU218581 lncRNA downstream 234663 28886972 ~ 28889126 (+) True G161312
TU218582 lncRNA downstream 237061 28889370 ~ 28890244 (+) True G161313
XM_022679985.1 mRNA upstream 262088 28300719 ~ 28386417 (+) True dhx36
XM_022679820.1 mRNA upstream 365187 28255972 ~ 28283318 (+) True gpr149
XM_022679808.1 mRNA upstream 452791 28185750 ~ 28195714 (+) False LOC111194790
XM_022679807.1 mRNA upstream 452791 28191379 ~ 28195714 (+) True LOC111194790
XM_022679803.1 mRNA upstream 463598 28180682 ~ 28184907 (+) True LOC103044051
XM_007251835.3 mRNA downstream 93387 28745696 ~ 28759007 (+) True fam219b
XM_015606482.2 mRNA downstream 116297 28768606 ~ 28859096 (+) True arid3b
XM_022679823.1 mRNA downstream 302408 28954717 ~ 28969395 (+) True LOC103037946
XM_022679825.1 mRNA downstream 365751 29018060 ~ 29063139 (+) True LOC103022881
XM_022679824.1 mRNA downstream 481319 29133628 ~ 29143190 (+) True LOC103023184
TU218548 other upstream 23720 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 1531294 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 1740878 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 1893192 26749379 ~ 26755313 (+) False LOC103021732
TU217233 other upstream 4528680 24119129 ~ 24119825 (+) True G160306
XR_002651275.1 other downstream 93387 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 418511 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 2222729 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 2222809 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 2222809 30875118 ~ 30878312 (+) False hmgn2

Expression Profile