RNA id: XR_454944.3


Basic Information

Item Value
RNA id XR_454944.3
length 1027
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC103036280
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 4453 ~ 18223 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCATGTGGTAAGAATGGAGGTTTAGAGGAAGAGGAacataaagtttttttgttctaaGATTATTTCTTTGCACTCTGTCAATTTACTCATAAGGACTTCTATGGACAAATCTTTTAACCATCAACAACAAATTCACTGAAGCTTCTTCATGGCCAAAACAAAGCTGGATTATTTCTTCACTGTTTGACTACATTACTAAGGATTTCTATGGACTTCTAAGGACTATTTCTGCCAGAACTGGGGTGAACGCACGCCTGGGGGTGCACAGTTCgcaagtgtaaaaaaaaggATCTTGTGTTGATAATGGAAGATTTGGAGCACTGTGAAAAGTCTTATCCAGCACATCCCATAGagtctcaatggggttaagatCTGGCAGTGTACATAACGTGGATAAGTGATGAATCAGTCTGGAGTGAAATAGCTGAACATGGTGATGACGCAGAGGTGGGTTTCAAAGCTGATTAGGTAGAAGAAGGTTCCAGAATGAAGATAATGGATGACTGATATCTTCAGATGTCTTGCCGACTCATctccaaaaacatttcataagcacaggaacaagaagagaaagaagagagcgACTTTAGTGATTTTAATTCTGAAAGATCTGAAACAATCTGCTACGAACAAGACAAGCTGGCAAGTGTGGGAgaagagatggaaagaaagatCTGCAGTGAGATGGAGCAGAAAAGctttgagagaaaaaaagaagctgaAAGAAGGGGGAATTTGAACCGTCTgagagatggatggaaagaGGCACAGCTggaaggagaagagagagagagacgtcaGTGAAGGAACAGGTAGATGGGAATAAAAAAGCTCTGCTGGTTTGTGctccacagcgctgtggagAAACTCTGATTAATCTTGTGTCGTATGACATGAGTCCCAGCAGAGCCATGTGACTTCCTCAGCAAGACGCCTCAGCCTCGTATCACAGGAGCAAAACCGGGAAGTACgagaagagaaaggagagagcaGGCGGGTGGCGGGAGGAATAAACACAGCAATATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210363 lncRNA downstream 28366 46589 ~ 46798 (+) True G155189
TU210419 lncRNA downstream 193629 211852 ~ 212054 (+) True G155217
TU210434 lncRNA downstream 270518 288741 ~ 288965 (+) True G155230
TU210432 lncRNA downstream 309200 327423 ~ 329164 (+) True G155229
TU210445 lncRNA downstream 312614 330837 ~ 331274 (+) True G155234
XM_022679438.1 mRNA downstream 403305 421528 ~ 537878 (+) True LOC103033531
XM_007251567.3 mRNA downstream 533706 551929 ~ 563776 (+) True LOC103040340
XM_007251642.2 mRNA downstream 660772 678995 ~ 681903 (+) True LOC103034482
XM_007251569.3 mRNA downstream 686132 704355 ~ 713021 (+) True blvrb
XM_007251568.3 mRNA downstream 695686 713909 ~ 718705 (+) True sertad3
TU210384 other downstream 131124 149347 ~ 153263 (+) True G155206
TU210867 other downstream 1185518 1203741 ~ 1214663 (+) False LOC103036073
TU210855 other downstream 1247597 1265820 ~ 1269379 (+) False G155491
TU210857 other downstream 1247597 1265820 ~ 1268195 (+) False G155491
TU210859 other downstream 1247597 1265820 ~ 1268195 (+) False G155491

Expression Profile