RNA id: TU233154


Basic Information

Item Value
RNA id TU233154
length 400
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G172215
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 504665 ~ 506092 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTTCTAGAAATTGTCCCATAACTTCACTGATCTGCACAGCCAGCTCTCGCGTCGGAGTGATGATCAAAGCACCGAcCTGCATTTTcttcagcttctcttcacgcttTAGAAGAATTTCCAGAACAGGAATCACAAACGCCAGAGTTTTCCCGCTTCCCGTCACCGCTTCAGCAGCAATGTCTTTATTACTCATAAACAGAGGGATGCAGGCGGACTGAACTGGGGTCATGAAGGTAAAGCCCAGTTTCTGGAGGGTCCGCTTTATCCCGTCCTGAAGATTCACAGATAAACTGTCCCATCTTCCCTCCGTCACGCGCTCCATCCTTTGATCTTCTTTTTAATACTAAACTATAAACTCACATGCTGTAAACACGCTCTGTGTGCAGCGCGGTCCGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233131 lncRNA upstream 16085 472033 ~ 488580 (+) True G172198
TU233074 lncRNA upstream 54649 298541 ~ 450016 (+) True G172161
TU233111 lncRNA upstream 62060 440907 ~ 442605 (+) False LOC103039814
TU233087 lncRNA upstream 87070 356043 ~ 417595 (+) True G172169
TU233099 lncRNA upstream 95686 408601 ~ 408979 (+) True G172180
TU233159 lncRNA downstream 33608 539700 ~ 593909 (+) True G172218
TU233207 lncRNA downstream 258534 764626 ~ 822760 (+) True G172266
TU233217 lncRNA downstream 316375 822467 ~ 876253 (+) True G172273
TU233220 lncRNA downstream 347858 853950 ~ 858287 (+) True G172276
TU233484 lncRNA downstream 484542 990634 ~ 990838 (+) True G172462
XM_022680762.1 mRNA upstream 33244 460448 ~ 471421 (+) True brap
XM_022681512.1 mRNA upstream 54140 435773 ~ 450525 (+) True LOC103039814
XM_007250301.3 mRNA upstream 132675 352600 ~ 371990 (+) True hic2
XM_022680757.1 mRNA upstream 165583 332022 ~ 339082 (+) True LOC103024445
XM_022680755.1 mRNA upstream 230395 244108 ~ 274270 (+) True LOC103041052
XM_022680768.1 mRNA downstream 8145 514237 ~ 531825 (+) True ptpn11
XM_022680769.1 mRNA downstream 8145 514237 ~ 531825 (+) False ptpn11
XM_022680770.1 mRNA downstream 30201 536293 ~ 541770 (+) True LOC103038879
XM_022680771.1 mRNA downstream 37688 543780 ~ 575333 (+) True LOC103038565
XM_022680772.1 mRNA downstream 37688 543780 ~ 575333 (+) False LOC103038565
TU233115 other upstream 21729 443311 ~ 482936 (+) False LOC103039814
TU233047 other upstream 272330 195901 ~ 232335 (+) False LOC103025596
TU232993 other upstream 440096 63363 ~ 64569 (+) True G172120
TU232981 other upstream 472323 29536 ~ 32342 (+) False LOC103028238
TU233162 other downstream 75638 581730 ~ 582805 (+) False LOC103038248
TU233164 other downstream 78275 584367 ~ 586022 (+) False LOC103038248
TU233211 other downstream 337749 843841 ~ 850815 (+) False LOC111194999
TU233563 other downstream 1001228 1507320 ~ 1542151 (+) True G172517
TU233608 other downstream 1120707 1626799 ~ 1628805 (+) True G172552

Expression Profile