RNA id: TU233936


Basic Information

Item Value
RNA id TU233936
length 832
RNA type TUCP
GC content 0.44
exon number 4
gene id G172770
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1994708 ~ 1997362 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCTCCTTAGTAGATCAAAAGCCTAACTACCATTCATGTTAATACTAGGATTACAAAATAACCAGACGAAAGGGTAAAACGTAAAAAACGCGCTTCATGCTGATTGCCGTTaactatacaaacacacacgtaCGACACAATCGCTTCCTACACAGTCTTCTGCTGGCCCTTCTTTCCAATCAGGGACTTGTGAATGTGTGGGATGACaccCCTCCAGCAATCGTGGCTTTGATGAGAGAATCCAACTCTTCATCACCACGAATGGCCAACTGTAAATGCCTTGGAGTGATACGCTTCACCTTCAAGTCCTTTGAAGCGTTACCTGCCAACTCCAACACCTCAGCAGTGAGGTACTCCAGGATGGCTGCACTGTACACTGCTGCTGTGGCACCAACACGTCCATGGCTCGTGGTGCGTGTCTTCAAGTGCCTGTGAATACGACCTACTGGAAACTGCAgaagaaatgattaaaaaaaaaatatatatatcagtcaCCACACTTTTTCAAATAAACAATGGTgtaaatggattttttcttcatcAAACAAATACTGAAaatcaaaaaagtaaataaaaatacacatgcCTGCAGACCAGCCCTCTGGGAGCGGGACACTGCCTTTGCCTTGGCTTTGCCACTGTCCTTCCCAGCCTTTCCTCCTGCCATATCTCCAGAGAGTGGTTTTAAAGGTCAATGGTCAGAATATTTAAGTCAAATCCACTACAGTCACAGAAAGACGGGCAGATAATGCATCGGGCGGTAGGAGGTGCTGAAATGGCGGGAGATATTTTACATAATTGAAgcgatttattttttttacacacccGTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233916 lncRNA upstream 30104 1962721 ~ 1964604 (+) True G172756
TU233899 lncRNA upstream 82983 1904782 ~ 1911725 (+) True G172741
TU233895 lncRNA upstream 105112 1888542 ~ 1889596 (+) True G172737
TU233894 lncRNA upstream 106244 1885208 ~ 1888464 (+) True G172736
TU233889 lncRNA upstream 112673 1865101 ~ 1882035 (+) True G172733
TU233928 lncRNA downstream 2027 1999389 ~ 2004425 (+) True G172763
TU233952 lncRNA downstream 45363 2042725 ~ 2043939 (+) True G172782
TU233960 lncRNA downstream 63736 2061098 ~ 2106334 (+) True G172788
TU233961 lncRNA downstream 128192 2125554 ~ 2130319 (+) True G172789
TU233974 lncRNA downstream 141277 2138639 ~ 2227606 (+) False G172800
XM_022680866.1 mRNA upstream 1376 1990765 ~ 1993332 (+) True LOC103032544
XM_007250263.3 mRNA upstream 13574 1974245 ~ 1981134 (+) True polm
XM_022680680.1 mRNA upstream 33094 1959085 ~ 1961614 (+) True LOC111194965
XM_007250268.3 mRNA upstream 144492 1839434 ~ 1850216 (+) True LOC103041266
XM_022680826.1 mRNA upstream 227783 1760477 ~ 1766925 (+) False LOC103042387
XM_022680868.1 mRNA downstream 12298 2009660 ~ 2018739 (+) True ddx56
XM_022680871.1 mRNA downstream 59003 2056365 ~ 2073303 (+) False ash2l
XM_022680869.1 mRNA downstream 63953 2061315 ~ 2073303 (+) True ash2l
XM_022680870.1 mRNA downstream 63953 2061315 ~ 2073303 (+) False ash2l
XM_007250257.3 mRNA downstream 97200 2094562 ~ 2103944 (+) True mier3
TU233877 other upstream 138954 1853282 ~ 1855754 (+) True G172725
TU233608 other upstream 365903 1626799 ~ 1628805 (+) True G172552
TU233563 other upstream 452557 1507320 ~ 1542151 (+) True G172517
TU233211 other upstream 1143893 843841 ~ 850815 (+) False LOC111194999
TU233164 other upstream 1408686 584367 ~ 586022 (+) False LOC103038248
TU234126 other downstream 721247 2718609 ~ 2726070 (+) False LOC103031931
TU234364 other downstream 1742940 3740302 ~ 3743205 (+) True G173094
TU234387 other downstream 1911580 3908942 ~ 3931991 (+) True G173111
TU234776 other downstream 2746207 4743569 ~ 4744249 (+) True G173397
TU234820 other downstream 2803267 4800629 ~ 4867919 (+) False ptbp3

Expression Profile