RNA id: TU233960


Basic Information

Item Value
RNA id TU233960
length 1841
lncRNA type read_through
GC content 0.35
exon number 3
gene id G172788
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2061098 ~ 2106334 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caaaaattcaagcagttcagcttggtttgatggcttgtgatcatccatcttcctcttgattatattccagagattttcaatttggtaaaaatcaaagaaaatcataatttttaagtgctctcttatttttttttccagagctgtatgactATGGTTAAAATGTCAGTTTCGTACTTGGTgagaaaagtttattaaacGACTTGCTGTAAAAGGGCTTTTACGCAAATCTGTGAGAAGAGACCTGTCTAATGCTATTTGAGCTtttcccccccacccccacccccctctcTTCCACACCCCTGTTCCCGTTACCGACATGATCAagtatatttacctcagtatggCTTTCCTTCGTGAACTCTTTacgtactctctctctctcatatggCAATAATTTGTAAATATGTACAGACACCAACATAACCTTcccactttctctcttccttGGCAAACAGACTTGAACttgaaaactttaaaatctgTGCTTTTGAGTCTGTAACTTAAGTATTCCACAGAAATGCCTTTACTTGCTTTATTGTTTAGctgattatataaatatatatacatacatacatatatatattttgtttttttgtttcttgtttttagtttttgctttacGAGAGATTCgcttaagaagaagaagaagagttatttatttatttattcactttaaagaaaaaactgcaAGTGGGTGTAGTGTGTTCGATGTTCAGTACATGGCGCgctaagctaggctaagctaagctgtcCTCCGCTGCTGGCCCAGGGCTTTTTGGGAGTTTCTGCGGCGACGCAGCTCCAGCTGAGCATCCTGGTGCTCCCATCTTCACAGAGGAAGCAGTGAAGTAGTTGAatgtacagtattattattattattattattattattattattaataataatattacgtttTATTACGGGGTTTACGAAACTGAACTGAGCGCGTCGTCTGAGGGAACGAATGTTTGCTGGTTAAGGCATGACCCTCTCTGCAGTGTTGCCTTAACACTTGTTGCTTATTcagaattaaaaagaaaaatacaaaaaaaaaaataagttgcatGTTTAAAATCTACctgaaaaagaaacacaaagacAACGGCCTCTGGGAGTGACAAAATAACGGAAACATCTCTCGTTCTGTTTTTGTAGCCCGAGAAAAAAGGTCTTTTATTcctgttttccttctttttcttttcttattccGAGAATTTATAGAAGGCTGGTTAGAGAAAGTGACCTGAGGACGTTTCGCTCTCGCGCTGCGTAAAACCGTTTCCTGTTCCTGAGGCCAGAAATTCTCCATTCTGTTTCTgttcgtttttttgtttttcattacaTACTTGAAGGATGTGTACTGAtaccattttatttaaatacacttaagaaaaagaaacaatattCTCAGATTTTGAGTCGTGTAATTTTGTGCAATTCATTTCTCCTGTCCCTCCAAGGATCGAGCAGAGCTTTAGAAAATTGTGTTGGTGAAGTAACTTATTCATGTCCAAAGTTTGTATGAAAAGTACTAGCTTAAAATTGTTGTAAATGTAGTGATGGTCATTTGCTTCCACAGGcgaaaacgtttttaaaaatgtaaatttgaaaacaagaaaaaaaaaagtttttcggAAGAATgcttaagtaattttttttttccattcgtTCACTTTTTTTGTGCTGGGggataaaagaagaaaacaaaaagcattACAGTCAGAATAAATAATTTTCTTCAACACTTATTTTGGTGTAAAGAAATTCTAGTGTAAAAATAGACAATCAAAAGCAGTAATTACTATTCAAAAAGGAAAATTTTATCATTCATAATGTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233952 lncRNA upstream 17159 2042725 ~ 2043939 (+) True G172782
TU233933 lncRNA upstream 38278 1987991 ~ 2022820 (+) True G172767
TU233928 lncRNA upstream 56673 1999389 ~ 2004425 (+) True G172763
TU233916 lncRNA upstream 96494 1962721 ~ 1964604 (+) True G172756
TU233899 lncRNA upstream 149373 1904782 ~ 1911725 (+) True G172741
TU233961 lncRNA downstream 19220 2125554 ~ 2130319 (+) True G172789
TU233974 lncRNA downstream 32305 2138639 ~ 2227606 (+) False G172800
TU233973 lncRNA downstream 78248 2184582 ~ 2186774 (+) True G172800
TU234113 lncRNA downstream 401147 2507481 ~ 2507692 (+) True G172898
TU234114 lncRNA downstream 475076 2581410 ~ 2581838 (+) True G172899
XM_022680868.1 mRNA upstream 42359 2009660 ~ 2018739 (+) True ddx56
XM_022680866.1 mRNA upstream 67766 1990765 ~ 1993332 (+) True LOC103032544
XM_007250263.3 mRNA upstream 79964 1974245 ~ 1981134 (+) True polm
XM_022680680.1 mRNA upstream 99484 1959085 ~ 1961614 (+) True LOC111194965
XM_007250268.3 mRNA upstream 210882 1839434 ~ 1850216 (+) True LOC103041266
XM_007250331.3 mRNA downstream 4654 2110988 ~ 2115322 (+) True pdxp
XM_007250249.3 mRNA downstream 109684 2216018 ~ 2232907 (+) True LOC103035434
XM_015606091.2 mRNA downstream 612332 2718666 ~ 2726076 (+) True LOC103031931
XM_022680884.1 mRNA downstream 727907 2834241 ~ 2897371 (+) True epb41l4a
XM_007250244.3 mRNA downstream 824721 2931055 ~ 2936876 (+) True LOC103033517
TU233936 other upstream 63736 1994708 ~ 1997362 (+) True G172770
TU233877 other upstream 205344 1853282 ~ 1855754 (+) True G172725
TU233608 other upstream 432293 1626799 ~ 1628805 (+) True G172552
TU233563 other upstream 518947 1507320 ~ 1542151 (+) True G172517
TU233211 other upstream 1210283 843841 ~ 850815 (+) False LOC111194999
TU234126 other downstream 612275 2718609 ~ 2726070 (+) False LOC103031931
TU234364 other downstream 1633968 3740302 ~ 3743205 (+) True G173094
TU234387 other downstream 1802608 3908942 ~ 3931991 (+) True G173111
TU234776 other downstream 2637235 4743569 ~ 4744249 (+) True G173397
TU234820 other downstream 2694295 4800629 ~ 4867919 (+) False ptbp3

Expression Profile