RNA id: TU234133


Basic Information

Item Value
RNA id TU234133
length 1131
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G172914
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2774888 ~ 2776018 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgcatcAGTAAATTTGCGATAATATGCAAAGCTCTAATACAAATCGATCAAATTTGTGCCTCCGATGTTTTGGTAGTGGTTTGAGAATGAAGTCCTCTGGAGTTCCCGGAACACTGAGTGCCATCTTCACTGAATGCTCTCTCGAAGATTCTCCTCAGAGACAGCTTAACCTTCTCTTTGAAGTCCTGCCCCATGAAGACGTACAGCACCGGGTTCATGCAGCTGTTGACGTACGCCAAAGAGATGGCCAGTGGGTCTACGGTTTTGGCCAGTTCGGAAACTTTTGGAGAACCGTAGACGTCCATCAAGCCTAGCACGTGATACGGCAGCCAGGACAGGAAGAAGGCCACGACGACCACCACCATGATCCGGAACGCTCTTCCGGAGCGGAACTGGCTGCGGCTAACCTTGCGGGCGATGAGGGCGTAGCACGCTGCGATGGAGAGCAGGGGTACCAGGAAGCCCAGCAGGAACCTGACGAGGGTCAATGTTCTGAAGGCTTCGTCTACTTCATGGGATTCGGTCATCTCATAGTCACCACTGCCGGAATGGAACGTGCAAATGGTTACTTCCAGTTCGGTGATTGTAATAACCTTACGAAAAATCATGTTGGGCAAGCTAAGTAACAAGGCCAGGACCCAGGCCAGCCCACAGCAGGCAGCAGCCAATCCTAGACTACGGTTATTCTGAGACCAAACCGGTTTAACGACCTGGACGAAGCGATCCAAGCCGATGAGGTTCAACGTGAAGACGCTGGCGAACATGTTGAGAACGATGACGGCCGGCAGGACCCTGCACATGACGTTCCCGTACGGCCAGTGGTTTTTCATGAGGATGTCGGCTACTGTGAATGGTATAGAGAGGCAGCAGAGGAGGTCAGCAATGGCCAGGTTAAGAAACCAGGTGGTGTTCACCGTCCTCTTCATCTTCAAACCAGCGATCCACACCACCAGGATGTTCCCAGGAACTCCGAGAGCGCAGGTCAGGCAGTAGAAGACCAGTGACACCACACTGAAGGGGTGGTTGTTGTCTTCGTGAGAAGAGACATCGTAGTCTGTGTAATTATAGTCATCCGTTGTAAAATTGTCCGAGTATGACTCGTTATAATCCATTGTATCCATTGTAATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234132 lncRNA upstream 52 2774543 ~ 2774836 (+) True G172913
TU234121 lncRNA upstream 81757 2667370 ~ 2693131 (+) True G172906
TU234118 lncRNA upstream 161375 2613226 ~ 2613513 (+) True G172903
TU234114 lncRNA upstream 193050 2581410 ~ 2581838 (+) True G172899
TU234113 lncRNA upstream 267196 2507481 ~ 2507692 (+) True G172898
XR_454845.3 lncRNA downstream 138771 2914789 ~ 2929255 (+) False LOC103032978
XR_002651407.1 lncRNA downstream 138771 2914789 ~ 2920300 (+) False LOC103032978
TU234159 lncRNA downstream 143624 2919642 ~ 2922997 (+) True LOC103032978
TU234295 lncRNA downstream 387354 3163372 ~ 3163578 (+) True G173045
TU234300 lncRNA downstream 422761 3198779 ~ 3199215 (+) True G173048
XM_015606091.2 mRNA upstream 48812 2718666 ~ 2726076 (+) True LOC103031931
XM_007250249.3 mRNA upstream 541981 2216018 ~ 2232907 (+) True LOC103035434
XM_007250331.3 mRNA upstream 659566 2110988 ~ 2115322 (+) True pdxp
XM_007250257.3 mRNA upstream 670944 2094562 ~ 2103944 (+) True mier3
XM_022680870.1 mRNA upstream 701585 2061315 ~ 2073303 (+) False ash2l
XM_022680884.1 mRNA downstream 58223 2834241 ~ 2897371 (+) True epb41l4a
XM_007250244.3 mRNA downstream 155037 2931055 ~ 2936876 (+) True LOC103033517
XM_015606101.2 mRNA downstream 155049 2931067 ~ 2936876 (+) False LOC103033517
XM_022680887.1 mRNA downstream 197739 2973757 ~ 2997663 (+) True LOC103030660
XM_022680888.1 mRNA downstream 225215 3001233 ~ 3007009 (+) True LOC111195006
TU234126 other upstream 48818 2718609 ~ 2726070 (+) False LOC103031931
TU233936 other upstream 777526 1994708 ~ 1997362 (+) True G172770
TU233877 other upstream 919134 1853282 ~ 1855754 (+) True G172725
TU233608 other upstream 1146083 1626799 ~ 1628805 (+) True G172552
TU233563 other upstream 1232737 1507320 ~ 1542151 (+) True G172517
TU234364 other downstream 964284 3740302 ~ 3743205 (+) True G173094
TU234387 other downstream 1132924 3908942 ~ 3931991 (+) True G173111
TU234776 other downstream 1967551 4743569 ~ 4744249 (+) True G173397
TU234820 other downstream 2024611 4800629 ~ 4867919 (+) False ptbp3
TU234823 other downstream 2024611 4800629 ~ 4869176 (+) False ptbp3

Expression Profile