RNA id: TU234607


Basic Information

Item Value
RNA id TU234607
length 405
lncRNA type intronic
GC content 0.37
exon number 2
gene id G173288
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 4506591 ~ 4507032 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagcacattttatccTGAGAGTTAATGCAGAACATTAGTAAAGCCCTTCAGGATGGTGCATTACCTGGAATGGTTAATATATATTGATCCTGAATTATCCATGGTCAATTGCATCACTTTTGTTAATAGTGCCTAGAGGACACCAGAGTGTGCCCTGCTAGAACACAATGGTAAAACAAAGGATCTGACCTTGATAAGGCCTAAAATTGCCTAAAAACACCTGACTCGTTAAAATATGCCTGGATTGGCCCGGATCCATTGAATCTGATTGAGACCTCTGTGTATCTGTTTGGGTTGATATCACTATTAGTCACAAAATATTCAGGTTGGACTGGTTGGATTTAGGTTATTAGGCTTAGTGACAATATAGTCTATCTACATTTgcaatttattatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234591 lncRNA upstream 15838 4452869 ~ 4490753 (+) True G173278
TU234581 lncRNA upstream 29941 4402036 ~ 4476650 (+) False G173270
TU234593 lncRNA upstream 39640 4463430 ~ 4466951 (+) True G173279
TU234579 lncRNA upstream 90379 4402036 ~ 4416212 (+) True G173270
TU234580 lncRNA upstream 90379 4411888 ~ 4416212 (+) False G173270
TU234612 lncRNA downstream 61036 4568068 ~ 4571221 (+) True G173292
TU234747 lncRNA downstream 185813 4692845 ~ 4693060 (+) True G173380
TU234750 lncRNA downstream 203079 4710111 ~ 4711181 (+) True G173383
TU234757 lncRNA downstream 205029 4712061 ~ 4775385 (+) True G173386
TU234783 lncRNA downstream 248111 4755143 ~ 4757691 (+) True G173401
XM_007244776.3 mRNA upstream 18711 4469092 ~ 4487880 (+) True rab6a
XM_007244775.3 mRNA upstream 18711 4469093 ~ 4487880 (+) False rab6a
XM_007244773.3 mRNA upstream 18711 4469096 ~ 4487880 (+) False rab6a
XM_007244774.3 mRNA upstream 18711 4469096 ~ 4487880 (+) False rab6a
XM_007244781.3 mRNA upstream 49026 4452254 ~ 4457565 (+) True ucp2
XM_007244768.3 mRNA downstream 20539 4527571 ~ 4562681 (+) True LOC103024108
XM_022681519.1 mRNA downstream 330714 4837746 ~ 4903631 (+) True ptbp3
XM_022680930.1 mRNA downstream 504935 5011967 ~ 5026274 (+) True ak3
XM_022680931.1 mRNA downstream 535505 5042537 ~ 5135658 (+) False exd3
XM_022680932.1 mRNA downstream 536282 5043314 ~ 5135658 (+) True exd3
TU234387 other upstream 574600 3908942 ~ 3931991 (+) True G173111
TU234364 other upstream 763386 3740302 ~ 3743205 (+) True G173094
TU234126 other upstream 1780521 2718609 ~ 2726070 (+) False LOC103031931
TU233936 other upstream 2509229 1994708 ~ 1997362 (+) True G172770
TU233877 other upstream 2650837 1853282 ~ 1855754 (+) True G172725
TU234776 other downstream 236537 4743569 ~ 4744249 (+) True G173397
TU234820 other downstream 293597 4800629 ~ 4867919 (+) False ptbp3
TU234823 other downstream 293597 4800629 ~ 4869176 (+) False ptbp3
TU234827 other downstream 329682 4836714 ~ 4903645 (+) False ptbp3
TU234946 other downstream 676459 5183491 ~ 5183777 (+) True G173501

Expression Profile