RNA id: TU234747


Basic Information

Item Value
RNA id TU234747
length 216
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G173380
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 4692845 ~ 4693060 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tactgtcacgtctggtgctgttagctcctctgtcccttccacaccaagctctaacggaggttctcaggtcaacaactacactacccagaatgcaccacccgctgacatcacgcactcacctgatcacgtgacacctcacctgcttcctccaggaagtcccgaatactgattactggcactataaaggtgcacgccacacaaacacccacgccgcgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234612 lncRNA upstream 121624 4568068 ~ 4571221 (+) True G173292
TU234607 lncRNA upstream 185813 4506591 ~ 4507032 (+) True G173288
TU234591 lncRNA upstream 202092 4452869 ~ 4490753 (+) True G173278
TU234593 lncRNA upstream 225894 4463430 ~ 4466951 (+) True G173279
TU234580 lncRNA upstream 276633 4411888 ~ 4416212 (+) False G173270
TU234750 lncRNA downstream 17051 4710111 ~ 4711181 (+) True G173383
TU234757 lncRNA downstream 19001 4712061 ~ 4775385 (+) True G173386
TU234783 lncRNA downstream 62083 4755143 ~ 4757691 (+) True G173401
TU234753 lncRNA downstream 80658 4773718 ~ 4792216 (+) True G173384
TU234754 lncRNA downstream 80658 4773718 ~ 4790865 (+) False G173384
XM_007244768.3 mRNA upstream 130164 4527571 ~ 4562681 (+) True LOC103024108
XM_022680916.1 mRNA upstream 166915 4503121 ~ 4525930 (+) True LOC103024425
XM_022681519.1 mRNA downstream 144686 4837746 ~ 4903631 (+) True ptbp3
XM_022680930.1 mRNA downstream 318907 5011967 ~ 5026274 (+) True ak3
XM_022680931.1 mRNA downstream 349477 5042537 ~ 5135658 (+) False exd3
XM_022680932.1 mRNA downstream 350254 5043314 ~ 5135658 (+) True exd3
XM_007241770.3 mRNA downstream 454698 5147758 ~ 5152836 (+) True nrarp
TU234387 other upstream 760854 3908942 ~ 3931991 (+) True G173111
TU234364 other upstream 949640 3740302 ~ 3743205 (+) True G173094
TU234126 other upstream 1966775 2718609 ~ 2726070 (+) False LOC103031931
TU233936 other upstream 2695483 1994708 ~ 1997362 (+) True G172770
TU233877 other upstream 2837091 1853282 ~ 1855754 (+) True G172725
TU234776 other downstream 50509 4743569 ~ 4744249 (+) True G173397
TU234820 other downstream 107569 4800629 ~ 4867919 (+) False ptbp3
TU234823 other downstream 107569 4800629 ~ 4869176 (+) False ptbp3
TU234827 other downstream 143654 4836714 ~ 4903645 (+) False ptbp3
TU234946 other downstream 490431 5183491 ~ 5183777 (+) True G173501

Expression Profile