RNA id: TU234823


Basic Information

Item Value
RNA id TU234823
length 2708
RNA type TUCP
GC content 0.39
exon number 4
gene id ptbp3
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 4800629 ~ 4904202 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGGAGTTGGTGTTGGGGCAGAGGGAgctgtgcagcagcagcagatcagctctgattctgtatttttattttctattagcTGTGTTTACCTTGCCACTGCTTCTGCTGTGCAATGGATGGTGGACGTCTGAAGAGCCTCCTGCTCCTGCGTTCATGCCTGGCCGTCCTACCATGAGCAATTCTACTCCATCAGCAGCTAATGGCAACGAGAGTAAAACATATAAAGGAGACCGATCCTGCGGCCCCTCTCGCGTCGTTCACGTGCGCAAGGTTCCCATTGAGGTCTCCGAGGCCGAGGTTATCTCATTAGGAATCCCGTTCGGAAAAGTTACCAATCTGTTGATGCTGAAAGCAAAAAACCAGGCTTTTATAGAAATGGCTTCTGAAGAAGCAGCGATCACCATGGTGAACTACTACACCACGGCCACGCCACACGTCCGTAACCAACCCGTCTACATCCAGTACTCCAACCACCGCGAGCTGAAGACCGACAACCTGCCCAACCAGGGGGTGAGGAGCCCGTCCGCACACCACCATTCTCTACCTCACTTCCAACCCCCACTCATCCGCCATAGTAACCCGTAACTATGGATACACTGAACATCCTCAATTAAGctatctgattggctgtcacCATACTGACTACATTTACATAAATCTTATGTGTAGAATGGATGGAGGCTGCTGCTGTTTAGGCTGCTGCTTTAGTCAGGGAATGATTTAGAACTATTAGACAGTCTGTAATGTTTAAAAGGTGCTTTAAAATCTCGAAAAACTCTGTTTATTAGTGATGCACAGAATATTTAGCAAGAAAACTATCAGTTTATTATAGGTCCTAATTCATTGTTTCGTTTAACATTAGGATTTCCTTACTTCTCTTCCTGTACCAACAGCCACAGAGAACACAGTGAAGACTGAACCTGCGTAGCTCAATGTTTTAGCCTAGCCAAGACATTTTCtcctcaaaaatgtaaaattcatgccatagagggttaaaaaaaatctgaatttgaTGGTAAATTAACAGGGATGTAAAACCACATCTGAGCATGTACACTCTTAACTAGAGCTGCATACTGTTTAATCAGCATAATCCTATGAATGCAGTCTATGGCACATTTAAACTTGATTTAACTCATAACTGGTTTTCAAAAACAATAATTAGTCTGACGTCTGCctgataatattttaatattttaattagggctgcagctatcgattcttTTTGTAATcgggtactctactgaaaaatcgattcgattaatcgagtaatcggataaaacattttttttgttaaagagcaattaaaaaggaattttactcaataatgaatgaccaattggtttccttttttagataagttatattttttaattcacaacatttccaaattgcaaatacaaataaataaaacacaataaataaataaataccacaataaaaaaaaaaaattaattacatttactttcacATTTGGATTTCTTGTAAATAACAAATCTAgggtataaatcaataaaaaaggcataaacatagtctttgtgttgtgcatcttagcttctgagACGTTGTCAGTTCTGCCAGTGTTGGATCAGTGTGCTGCATTCTTTTACCGCCAAGCCGCTTCTCCAAAATATATCAGGACCTGTGGAATAATTGTGACACACAAGTATTACAAATGTtgctcttttctttatttatatgttggaCTATTTGGGTCTAATTACATCACTAAGActaataactctaataataagttCATGGCCGTGCATTTATTAAGATTGACACCTATCGCATTGGGGCACATTAGACACTAGTGGTAATcaatattttacccaataaataAGAGACACACTTCCTTATATGAACAAAAGTGTTCATACTTTTTTGTCTCACTGGCCAAATGTACTCTTAGATGAAGAAATCAAGCATTTAGTTTCCAGCCAAAGTAACTTCAGTTTAGCTaacttttaaccatttttattgtttatattctgaactccacagcgctgtttactgtttacataaagcctgtatgaactctgttctaataaactaaccacacattatAGACAGTGCTTCTATTAATTCACACTCCAAAGCGCTGTCGTTTTgttattaattcacattaatgttaatctcattgatttattataagttatatttaccTGCTCTCTCGGCGTCCTCGCGTCTCGGGTGTCCTCGGCTCAGATggtgcagcattaaaacgcgcTGTTTTGGCACTGCACCGAGTACAGGTCACAGTTCGAACATAAAATtcttttattcctttaaaatcGCTGTTTTCTCTCGCCACTTCCATTTTTGCCGCTGCTTAAACCTCCGTCTCCTTGTTCCCGGGCTGGGTGACGTAACCCTGAGCgcgttgtcaaaataaaagtcgcaAAAATACCGCGCgctgagtttattaattaaataaacgattactcgaggcacagaaaattaatcgatcaattttgtgaatcgagttactcgatttactcgagtaatcgtttcacccctaattttaataaagaacCTGATCCAGATTCAGAATGATCCTCAGTTATAGATTATTGATTTCCTCGTACCTGTACCTGTTTTTTCAGGCAGCTCTTTTAAGCAGGTAGAGCGGTGTTGGGTAACAGTGGTGCCTGcgggagagtgtgagagtgagtgtgagagtgagtgtgagagtgagtgtgagagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234835 lncRNA upstream 1311 4798488 ~ 4799318 (+) False G173426
TU234836 lncRNA upstream 1648 4798488 ~ 4798981 (+) True G173426
TU234756 lncRNA upstream 5240 4777546 ~ 4795389 (+) True G173385
TU234753 lncRNA upstream 8413 4773718 ~ 4792216 (+) True G173384
TU234754 lncRNA upstream 9764 4773718 ~ 4790865 (+) False G173384
TU234851 lncRNA downstream 8646 4877822 ~ 4879058 (+) True G173434
TU234856 lncRNA downstream 40657 4909833 ~ 4910105 (+) True G173439
TU234830 lncRNA downstream 62592 4931768 ~ 4934389 (+) True G173422
TU234831 lncRNA downstream 67787 4936963 ~ 4939158 (+) True G173423
TU234881 lncRNA downstream 114272 4983448 ~ 5028854 (+) False G173450
XM_007244768.3 mRNA upstream 237948 4527571 ~ 4562681 (+) True LOC103024108
XM_022680916.1 mRNA upstream 274699 4503121 ~ 4525930 (+) True LOC103024425
XM_022680930.1 mRNA downstream 142791 5011967 ~ 5026274 (+) True ak3
XM_022680931.1 mRNA downstream 173361 5042537 ~ 5135658 (+) False exd3
XM_022680932.1 mRNA downstream 174138 5043314 ~ 5135658 (+) True exd3
XM_007241770.3 mRNA downstream 278582 5147758 ~ 5152836 (+) True nrarp
XM_022680937.1 mRNA downstream 501768 5370944 ~ 5409080 (+) True dbh
TU234776 other upstream 56380 4743569 ~ 4744249 (+) True G173397
TU234387 other upstream 868638 3908942 ~ 3931991 (+) True G173111
TU234364 other upstream 1057424 3740302 ~ 3743205 (+) True G173094
TU234126 other upstream 2074559 2718609 ~ 2726070 (+) False LOC103031931
TU233936 other upstream 2803267 1994708 ~ 1997362 (+) True G172770
TU234946 other downstream 314315 5183491 ~ 5183777 (+) True G173501
TU235446 other downstream 1668148 6537324 ~ 6541132 (+) False LOC103041160
TU235953 other downstream 3035419 7904595 ~ 7925440 (+) True G174259
TU236173 other downstream 3679777 8548953 ~ 8552609 (+) False LOC103038455
TU236775 other downstream 5962992 10832168 ~ 11019418 (+) False G174874

Expression Profile