RNA id: TU235949


Basic Information

Item Value
RNA id TU235949
length 1644
lncRNA type inter_gene
GC content 0.47
exon number 6
gene id G174256
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 7883716 ~ 7892563 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGGTATCTGGCCTAAAAGAGccataaataaaactttattctCTCAATTTATTAACAAGCCACAGTGCATCTGTGGCCGTCTACCACAGCGCTTAAAACTTTGAGAACGGCAGTCCTCAGTTCAGGAGATCCACTCTATACATTTCGAGCCAACCGTGAATCTCCAGGTTGTTgggttgtttttttgcattcagTCCGGTCctttagaaaaacaaaacgaaTGCATTAATGCTGTAGCAAAGGGGCGGCAGAGCAGCAGGTCTTTCCTTTTCACTCCAAAAGGGCtaatagagaaaaaaagcagttgatggaaaaaaaaaaaaataatacaataaaacaaacaaataataataataataaaataaccaaataaATCCTCAACCTCGTTTGACAAAGCCAGAGCAGCATGCGGTAATTCTATGCTGTATGAAGTTctcttttatgttgtttttattctgaatACACATTCTCTTTCTCCCCAGCGCCGTAGCTGTATTTGTGTCGTATTATCTTTAAAACATGAGTGAAATCTCCAAATAATACTAGTGATAACGATAAGAATAAAGATGATAAAACCTATAGCAGCAAAAGAGAACTAATAAAATGAGTAACAGCTGAAGCAACCCTGGTTTGGAGGAAGGCATGGGTTAAAAGAGGTCCATGGGTGAGTTGGTGGCAGGGGGGGTAAAGGGGCCGGGGAGGGAGGGGCGTGCTCATCTGCCATCGGCAGGGGTGCGGCTGAGGGTGAGGGAGGCCATGACGCGGCCGAAGCGCTCGCACAGCTCCAGCGTGGAGTACGACGGCATCTTAGGCGGCTCGACGAACGTCTTGATCTCAGTTGAGCAGTCGAGCAACTTGGGGAGGAAGTCGGTCAGCTTCTCCTGAAGGttagGCTCCATTTCCTGGCCCAGGTAGGAGCACCAGCGGTTCCTCATGTCCTCCACCGCCACCATGTCCTTCTCCTCCAGCTCATCCACCAGCAGCAGCGGGATGCAGGGCACCACCAGCTCGTTCATGATGTTCAGGCCGGTGTTGACCTCCGGCTCCTCTCCGGTCTCAAACAGAGCTGCTGCGTGCTCGTTCAACTTcAGCAGGCACTCTCTGCGGTAATGGGCTATAAGCTCTTCATCATGGCCTCTGTACGGCCCTTTGGAGAGCAGCTCTTTATTATACTGATAGGCGTAGATCAGGTACATCAAGGCCTCCACAAAACTTTTCTTCTGAAACAGCTCCAAGCCGATCATTAGGAAGATCGTCGTCTCACGGAAATTCCTGTAATCCTGATGCCACAACTCATACTCCTCCATGTTAACTTCGTCAGGCTTAATGAGATCGAGTTTTGCTCGCGCCACTTTCATGATGCTCTTacatCTCTCATCAAAGCCGAGGTTTCTGTCTGCAAACTGCATGAGGAGGGTCCTCTCCAGAATCTTTTTGGGCGCCTGGTTCTGGATGAAGTAAACGATGACGTGCTGAAGCCGGTGGTCATTCTGGGGGGCCGTGTCCTCCTGCGCTAGCCTCAGCAAGCGGCCATACTCAACTTTGATCGCCTTTTAGACAATaatcaaagaaagaaagaaaaaaaggaaaaaaaaagggaatgatGGGTGTGGACATGTGTgggtgagtgaaagagagaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235839 lncRNA upstream 211856 7667401 ~ 7671860 (+) True G174176
TU235832 lncRNA upstream 238165 7644929 ~ 7645551 (+) True G174170
XR_001518606.2 lncRNA upstream 502684 7358585 ~ 7381032 (+) True LOC103045725
XR_001518607.2 lncRNA upstream 502684 7358587 ~ 7381032 (+) False LOC103045725
TU235803 lncRNA upstream 517662 7363239 ~ 7366054 (+) False LOC103045725
TU235944 lncRNA downstream 10237 7902800 ~ 7903842 (+) True G174255
TU235966 lncRNA downstream 113710 8006273 ~ 8064801 (+) True G174263
TU236008 lncRNA downstream 265475 8158038 ~ 8166662 (+) True acer3
TU236120 lncRNA downstream 337745 8230308 ~ 8230617 (+) True G174366
TU236172 lncRNA downstream 605892 8498455 ~ 8498951 (+) True G174408
XM_007244750.3 mRNA upstream 123866 7739611 ~ 7759850 (+) False LOC103044917
XM_015604641.2 mRNA upstream 123866 7739628 ~ 7759850 (+) False LOC103044917
XM_022680991.1 mRNA upstream 123866 7739922 ~ 7759850 (+) True LOC103044917
XM_007244819.3 mRNA upstream 198257 7683167 ~ 7685459 (+) True LOC103040212
XM_007244754.3 mRNA upstream 570872 7298963 ~ 7312844 (+) True LOC103046439
XM_022680997.1 mRNA downstream 137712 8030275 ~ 8062760 (+) False LOC103039588
XM_022680996.1 mRNA downstream 137713 8030276 ~ 8062760 (+) True LOC103039588
XM_022680999.1 mRNA downstream 152893 8045456 ~ 8062760 (+) False LOC103039588
XM_022680998.1 mRNA downstream 154833 8047396 ~ 8062760 (+) False LOC103039588
XM_022681002.1 mRNA downstream 243016 8135579 ~ 8143458 (+) True LOC103042774
TU235446 other upstream 1342584 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 2699939 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 2980071 4836714 ~ 4903645 (+) False ptbp3
TU234823 other upstream 3014540 4800629 ~ 4869176 (+) False ptbp3
TU234820 other upstream 3015797 4800629 ~ 4867919 (+) False ptbp3
TU235953 other downstream 12032 7904595 ~ 7925440 (+) True G174259
TU236173 other downstream 656390 8548953 ~ 8552609 (+) False LOC103038455
TU236775 other downstream 2939605 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 2939605 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 3537308 11429871 ~ 11436530 (+) True G174994

Expression Profile