RNA id: TU235966


Basic Information

Item Value
RNA id TU235966
length 1899
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G174263
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 8006273 ~ 8064801 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taagactggtggaggagaacatgccaagatgcatgaaaactgtgattaaaaaccaggattattccaccaaatattgatctctGAACTCTTATACTTCtgaccttgttttctttgcgttatttgaggcgttatttcagccatttctcattttctgcaaataaatgctttaaatgataatatttgcatttgaaatttgggagaaaggttgtccatagtttatagattcagaaactgaagtggtctcttaatttttttctagagcagTATGTACAGGATATCTTCTGGTTATCTAAGTAAGTAAATGCCCATATAAAAGAACAATGGTTTGGCAGACGGTGATCCAGGACAGACACAGGGATGAGGGTATCGAGAACTTCCATTCATATTTCAGCCAGTGGGAggtctcctcaataataacaTCTCTGCTTACAATCTGATATGGCGGACATATTGGATTGATCTATGGTTTTTAAATGAGAAGGCAGGCGTTTGACAAATCTGGAAATCTGGTTTAGACTTTTACTGCCTTAAAGTCTTGTCGgaaatatcatatttataagattAATACAAATTCACCCACAAACTCTTACTGTCCCTTTCTGTTAATCCCAGCTTTATAACTTGGGGGCATGTCAagaaaatgctgatttaataGCACCTGCagcctgttttttaatgtttcattctcatgcacacataaaaaaaattatatgatcaggagatcactggttcgattcctgttcatgtagtttgCTATCATCTACTggggccctgagagagcacagttggccttgctccctccaggtgggtaaatggcgctctctccccacatcactaaaagggtgatgtcgatcagcacaaggcatctgtgagctgatgtatcagaaccgagtcactgcgctttcctccgagcgatagcgctgtgatgctactcggcaatactACATCAGCAggagttcgaaaagaggcggagtttgacttcatatgtatcagaggaagcatgtgttagtcttcaccctcctggtgtgttggggcatcactagtgatagtgataggtggcgtcctagtgagtgggttgggtaattggctgtgtaaattggggagaaaatgggcaaaaaaatagaaaggcCATGAGGAATTGGGCCAAATGTTGTTTATACCCAAAAACATGAACATTGACAAAAGCAGTGTGGGCTGATTCCTATATTTTACTTGGCAACCGggcggggtgttggcacatcaAGCACCTGCCCATTTGGGGCCTGAGCGTTTGGGCCAGACTCAATCCTAAATTGAAACCAGAGCTGGTCCAATGAAACTCAGATATGGCAGACTTAAGAGCACCTAATAGAGATAAAAATAGAGCTTATCGATGCAGCATTTTAATCAGGTGTTgccaattaaacaaaaacaatttcaTCCGTTTCTGTTTGGGATACATATGGCTAATGTGAAAGAGAAATtactaaacatttaattaaacatgagaaaaaatacagtttaaatgtttaaacaaagTTCACTACTGTTTTCCTGGTGAAATGCTCTACCAGCTTGATGTGTCAAACACCCACTTTACCATTTAAATACAAGAATGTGGCAACATTTCATAACAGTTTCAGCCACAGCGTGCATCTATAATTGGATCACTATCTGCCAAaccgttttcgttttttttttttttatgtgggtgTTTTCTTACATTTCAGGACATGCTATATATTCTGTATAAATAGGCCATAAAAATGGGAACTTAAGtattactgaagtattattgtaaatatactgtaaatataatatgTGAAAGagatatataatgtttaaaccTTGCTTAATAGATGAAAGAGCCAGTGAAAGATCTGCTGAATGAACCTGTATAATATTTTCTTcaataaaaga

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko03050 Proteasome
ko04060 Cytokine-cytokine receptor interaction
ko04650 Natural killer cell mediated cytotoxicity
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235944 lncRNA upstream 102431 7902800 ~ 7903842 (+) True G174255
TU235949 lncRNA upstream 113710 7883716 ~ 7892563 (+) True G174256
TU235839 lncRNA upstream 334413 7667401 ~ 7671860 (+) True G174176
TU235832 lncRNA upstream 360722 7644929 ~ 7645551 (+) True G174170
XR_001518607.2 lncRNA upstream 625241 7358587 ~ 7381032 (+) False LOC103045725
TU236008 lncRNA downstream 93237 8158038 ~ 8166662 (+) True acer3
TU236120 lncRNA downstream 165507 8230308 ~ 8230617 (+) True G174366
TU236172 lncRNA downstream 433654 8498455 ~ 8498951 (+) True G174408
TU236202 lncRNA downstream 497709 8562510 ~ 8562865 (+) True G174424
TU236222 lncRNA downstream 590723 8655524 ~ 8658542 (+) True G174438
XM_007244750.3 mRNA upstream 246423 7739611 ~ 7759850 (+) False LOC103044917
XM_015604641.2 mRNA upstream 246423 7739628 ~ 7759850 (+) False LOC103044917
XM_022680991.1 mRNA upstream 246423 7739922 ~ 7759850 (+) True LOC103044917
XM_007244819.3 mRNA upstream 320814 7683167 ~ 7685459 (+) True LOC103040212
XM_007244754.3 mRNA upstream 693429 7298963 ~ 7312844 (+) True LOC103046439
XM_022681002.1 mRNA downstream 70778 8135579 ~ 8143458 (+) True LOC103042774
XM_022681003.1 mRNA downstream 80448 8145249 ~ 8148344 (+) True LOC103042468
XM_007244740.3 mRNA downstream 84318 8149119 ~ 8162185 (+) False acer3
XM_007244815.3 mRNA downstream 109074 8173875 ~ 8186496 (+) True LOC103038957
XM_015604663.2 mRNA downstream 123928 8188729 ~ 8209285 (+) True LOC103041846
TU235953 other upstream 80833 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 1465141 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 2822496 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 3102628 4836714 ~ 4903645 (+) False ptbp3
TU234823 other upstream 3137097 4800629 ~ 4869176 (+) False ptbp3
TU236173 other downstream 484152 8548953 ~ 8552609 (+) False LOC103038455
TU236775 other downstream 2767367 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 2767367 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 3365070 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 3844071 11908872 ~ 11913456 (+) True G175108

Expression Profile