RNA id: TU236172


Basic Information

Item Value
RNA id TU236172
length 411
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G174408
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 8498455 ~ 8498951 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGGCTTATAGATCTTGTCGAGATCTTTAAATTAATAGCAGGTTGCGAAATGATACGTCGTACGGTTTTCGTACAAATGTCGTACGAAGTTTccccatagaaatgaatggggggcccagagttccatctcgcacacgagcagctctgcgcacggaaccccttctctcccctgctcctccagtactgtgagtgtatggaggagctgctgtatggagcagctatcagtcaaaagtttggacaccccggcacccCAGCCAGGGCTCAGCAGCCACCtattaactgcttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaatacgttagcaacttcctagcaaccacttagcaaccactttagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236120 lncRNA upstream 267838 8230308 ~ 8230617 (+) True G174366
TU236008 lncRNA upstream 331793 8158038 ~ 8166662 (+) True acer3
TU235966 lncRNA upstream 433654 8006273 ~ 8064801 (+) True G174263
TU235944 lncRNA upstream 594613 7902800 ~ 7903842 (+) True G174255
TU235949 lncRNA upstream 605892 7883716 ~ 7892563 (+) True G174256
TU236202 lncRNA downstream 63559 8562510 ~ 8562865 (+) True G174424
TU236222 lncRNA downstream 156573 8655524 ~ 8658542 (+) True G174438
TU236379 lncRNA downstream 593490 9092441 ~ 9094096 (+) True G174559
TU236396 lncRNA downstream 627757 9126708 ~ 9153133 (+) True rexo2
TU236397 lncRNA downstream 627757 9126708 ~ 9151066 (+) False rexo2
XM_022681006.1 mRNA upstream 49299 8317232 ~ 8449156 (+) True dscam
XM_022681005.1 mRNA upstream 211047 8274202 ~ 8287408 (+) True tmprss2
XM_007244735.2 mRNA upstream 229092 8260946 ~ 8269363 (+) True acat1
XM_015604656.2 mRNA upstream 238064 8252902 ~ 8260391 (+) True LOC103038016
XM_015604657.2 mRNA upstream 249134 8245886 ~ 8249321 (+) True LOC107197515
XM_007244728.3 mRNA downstream 49933 8548884 ~ 8552610 (+) True LOC103038455
XM_022681010.1 mRNA downstream 87232 8586183 ~ 8602747 (+) False LOC103036350
XM_022681012.1 mRNA downstream 87319 8586270 ~ 8602747 (+) True LOC103036350
XM_022681013.1 mRNA downstream 87319 8586270 ~ 8602747 (+) False LOC103036350
XM_015604666.2 mRNA downstream 87319 8586270 ~ 8602747 (+) False LOC103036350
TU235953 other upstream 573015 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 1957323 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 3314678 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 3594810 4836714 ~ 4903645 (+) False ptbp3
TU234823 other upstream 3629279 4800629 ~ 4869176 (+) False ptbp3
TU236173 other downstream 50002 8548953 ~ 8552609 (+) False LOC103038455
TU236775 other downstream 2333217 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 2333217 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 2930920 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 3409921 11908872 ~ 11913456 (+) True G175108

Expression Profile