RNA id: TU236379


Basic Information

Item Value
RNA id TU236379
length 1656
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G174559
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 9092441 ~ 9094096 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacttgtgtaagtacactcaccctggtactcatgtgtacttacacaagtcaaaattaaccttaatacacatgtgtaattacataacctgtacctctgtagttaatctgtaacaatgtgtacttcatcagtagttacactgtagttacatggattattactgtgtaactacatagtacttagggacacttattataaagtgaaaCCAGTGTACGTACTGTACGTATTAATGCCATTCAGAATgcgtgtgttttttgtttattttaataagcaATGTCTTTTGTAAGTTAGCGTAGCCACATTAGCCACATTTCCTGGTTTCATGAGGAAAGACTTTGGCTCAAAGCTGGCATGtggttacttaaaaaaaaaaaaaaaaaaaaaaaaaaatcttctgttCATTGAATTGAACAGACTATTCATTGTTCATGACAATCAGGACTCCCATCATCCTCAGAAAGTTGCCACACATTGACTCACACATTGACTCACACATTGACTCATgcacactcatgcacacacacacagatacatgcAGTACAGTAAAGTGTGCTTCGTTTCTGAGGACTTTTTCCAGGAGCTGGACCACTTCCAGGGCGCCGGCTTTCGTCGAATCGAAACGGAGGAAACCTTGAGGCTCGCATCAATTTTTCATGAGAAGCCAAACTCTGGGGCCTCATATAACTCAGCTGTGATTCAAAGCACAAAGGTGTCCGTGTGTGTCAGCCACAAGTTCTGCCTGACTAAAAGAGAAGAAAGTCCTAACACAGGGACACTGGGGCGAACCTCTGCACTCCATCCACAATGAGATTCTGCCCCTCTTTTCAATGTCTTTTCACACCATTGTAAATTCtcctcactttcttttttttttttttgtaggtttgctttttttttcgcCATTTCTCGAAAGCGGTGCCAAACCCAGTGCATCGCGTGCGACTGTTTGCTTGCATGACCAGGCAGATTTGTTGTCGCGCAAAACTCTGAGAAGCTGAGGAGATGCTAAGGAACCTTCTCAAGAAAGAAACAGCGTCTCAAAAGCGTCTCAAGCAGTGGACGTAATCCAAATGTTTACACGTCGTCGTCGTcaaaggagaaggaggaggaaaagGAAGTGGACAGATTGTGGATATCCTACTTAATGTGAGCTCTGAACAGACCTCAAAAAGCGTTTTAATGAAGTGAGTGTGTACAGTGAATCCAAATACTCCGTCGTTTAAATGGCCTACTTCTTTCATTTCGGCTTTACGATGCTGTTACGTCGTTTACACTCGAGCTTGTAAATCCCGCATCCCGTGCGAGTCTactgtgatttttatttctttttttgtctgcaGATAACGACAACCATAAccataatgatgatgatgatgatgatcggAGTGATGGAACTTTGATGAAACTTTCCTTCTTTTTGATAGCTGCTTTTGTTTTCCAGACTCATGTATGTTTAAGGCCGCTGTTTTAAGCGAGCCCGTTCACAAGGCCTGACCGAACcacgttaaaaaaataataattaagtaaattGGCGAGTGTCAAGTGCCTCCTTTTGGCAGCTAAAAGGGGGACAGTCGTgagaacaagaaaaacaaataataataataataataataatacgacTTTGTTGATGCATAAAAGCAATCAAATTCTTTGAA

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236222 lncRNA upstream 433899 8655524 ~ 8658542 (+) True G174438
TU236202 lncRNA upstream 529576 8562510 ~ 8562865 (+) True G174424
TU236172 lncRNA upstream 593490 8498455 ~ 8498951 (+) True G174408
TU236120 lncRNA upstream 861824 8230308 ~ 8230617 (+) True G174366
TU236008 lncRNA upstream 925779 8158038 ~ 8166662 (+) True acer3
TU236396 lncRNA downstream 32612 9126708 ~ 9153133 (+) True rexo2
TU236397 lncRNA downstream 32612 9126708 ~ 9151066 (+) False rexo2
TU236399 lncRNA downstream 46053 9140149 ~ 9141298 (+) True LOC111195017
XR_002651415.1 lncRNA downstream 46301 9140397 ~ 9141221 (+) False LOC111195017
TU236404 lncRNA downstream 219808 9313904 ~ 9314138 (+) True G174583
XM_007244712.3 mRNA upstream 1648 8817587 ~ 9090793 (+) True kirrel3
XM_007244713.3 mRNA upstream 408490 8678239 ~ 8683951 (+) True kcnj1
XM_007244714.3 mRNA upstream 419330 8666496 ~ 8673111 (+) True dcps
XM_007244715.2 mRNA upstream 435388 8646882 ~ 8657053 (+) True foxred1
XM_007244718.3 mRNA upstream 446316 8636585 ~ 8646125 (+) True stt3a
XM_022681522.1 mRNA downstream 42859 9136955 ~ 9150078 (+) False rexo2
XM_022681020.1 mRNA downstream 112456 9206552 ~ 9313383 (+) True LOC103036746
XM_022681021.1 mRNA downstream 112456 9206552 ~ 9313383 (+) False LOC103036746
XM_022681022.1 mRNA downstream 260812 9354908 ~ 9498192 (+) True LOC103036148
XM_022681024.1 mRNA downstream 260814 9354910 ~ 9498192 (+) False LOC103036148
TU236173 other upstream 539832 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 1167001 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 2551309 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 3908664 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 4188796 4836714 ~ 4903645 (+) False ptbp3
TU236775 other downstream 1738072 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 1738072 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 2335775 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 2814776 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 2814776 11908872 ~ 11913456 (+) False G175108

Expression Profile