RNA id: XM_022681522.1


Basic Information

Item Value
RNA id XM_022681522.1
length 523
RNA type mRNA
GC content 0.48
exon number 3
gene id rexo2
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 9126708 ~ 9153133 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGGTCGGAAGTGGGCAGCATGTCGGCGCCTATAAGAACAGCAGCGTGTAGATTAGTAGCAGGAGTTTACTCGCGCTCTCTCACCAAGCGCGCGCTTACACACACCACCAAACacaccacagctcccagtgCAGCTCTCCTGCTCCACACATGCAGCTCTGCCAGTGCTGCAGCTGAGATGTGGAGGAACATGTCtgcttcatcatcatcatcttcatcacagTCTTCCTCAGACAGACAGAGTCAGAGGATGGTGTGGGTTGACTTGGAGATGACTGGGCTCGATATTGAAAAGGACCAGATAATTGAGATGGCGTGCATCATCACAGACTCGAATCTGAACATCCTAGCAGAGgTTTCCAGAGCGCTGGACGACATTCAGGAGAGCATTAAAGAAATGCAGTATTACAGagtgaatatttttaaagcagagACGGAAGAGAAGAAGTGGAAGATCATAGAGAATGGAGAGAAGTGTGAAGCGTAAtctggttgtttggttggtttgggTTTTTAAGATTGA

Function

GO:

id name namespace
GO:0004527 exonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236379 lncRNA upstream 42859 9092441 ~ 9094096 (+) True G174559
TU236222 lncRNA upstream 478413 8655524 ~ 8658542 (+) True G174438
TU236202 lncRNA upstream 574090 8562510 ~ 8562865 (+) True G174424
TU236172 lncRNA upstream 638004 8498455 ~ 8498951 (+) True G174408
TU236120 lncRNA upstream 906338 8230308 ~ 8230617 (+) True G174366
TU236404 lncRNA downstream 163826 9313904 ~ 9314138 (+) True G174583
TU236403 lncRNA downstream 169312 9319390 ~ 9321343 (+) True G174582
TU236442 lncRNA downstream 221363 9371441 ~ 9373948 (+) True G174609
TU236563 lncRNA downstream 610474 9760552 ~ 9762446 (+) True LOC111195021
XR_002651416.1 lncRNA downstream 610478 9760556 ~ 9762344 (+) False LOC111195021
XM_007244712.3 mRNA upstream 46162 8817587 ~ 9090793 (+) True kirrel3
XM_007244713.3 mRNA upstream 453004 8678239 ~ 8683951 (+) True kcnj1
XM_007244714.3 mRNA upstream 463844 8666496 ~ 8673111 (+) True dcps
XM_007244715.2 mRNA upstream 479902 8646882 ~ 8657053 (+) True foxred1
XM_007244718.3 mRNA upstream 490830 8636585 ~ 8646125 (+) True stt3a
XM_022681020.1 mRNA downstream 56474 9206552 ~ 9313383 (+) True LOC103036746
XM_022681021.1 mRNA downstream 56474 9206552 ~ 9313383 (+) False LOC103036746
XM_022681022.1 mRNA downstream 204830 9354908 ~ 9498192 (+) True LOC103036148
XM_022681024.1 mRNA downstream 204832 9354910 ~ 9498192 (+) False LOC103036148
XM_022681025.1 mRNA downstream 204832 9354910 ~ 9498192 (+) False LOC103036148
TU236173 other upstream 584346 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 1211515 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 2595823 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 3953178 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 4233310 4836714 ~ 4903645 (+) False ptbp3
TU236775 other downstream 1682090 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 1682090 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 2279793 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 2758794 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 2758794 11908872 ~ 11913456 (+) False G175108

Expression Profile