RNA id: TU236403


Basic Information

Item Value
RNA id TU236403
length 1871
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G174582
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 9319390 ~ 9321343 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTATTAAAGCATCATTTCATAAACATATTATTCAGGTGAAGTACCATAACGGTAATAGAAGCATAGGCATAAACCGGCCCGGTTGCTCCCGAGACTCTGTGGAAACGCTGTGAAGGAGGGATGTGGGGAGGAAGAAGCCGGAGCTGCTTTCATATGAACTTATTCAGTCTTTAACTCTGACCTACATGTGTTGCAATTTTATCACTGGCCAACTCTGATCTTGTACTGTTGTGAAACTATGCCAGCTTCTCTGCTGTATTTTAGGACATGAGTTGGTGTTCCACTTTTGCTCGCAGTTTGTagtgctattcttttttttttctttctttcttttttccagcTTTCATTTTTCTCGTTTTTACTGTCACAGACCTGGTTAAAAAAGACACACTCCCAGTTTCCGTGTTTTAATGAAAGCGGGTGCTGGGTGTAATAGGAAAGCATCCCTCGGAGACGGTCCTGCTGCTTTAGGCTACAGGATCCAGAGCTCTTTGAATGAAATGAGATGAGTCAATGACTGATCACTGGAGGTCTTTTAGGGGGTAGtttgatggaaaaaaaatcaaatttgcaCAGTTTTCCCACATTTTAAACCAAATGTAGCTGAATAGATGACTTGTGTTTGCTGTCTGAAGGTTGCTCATGAAGgattacatatacagctctggaataaaatgagaccacttaaaaatgatgagtttctttgattttaccaaattgaaatactctaaaatacaatcaagaggaagatggatgatcacaagccatcaaaccaagctgaacttcttgaatgtatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgcaagactggtggaggagaacatgatgccaagatgcacgaaaactgtgattaaaaactaaccAGGGTTATCaaataccaaatattgatttctgaagtcttactttttaaatatgaacttgtttgaaagctctgcatcttttttgttatttcagacatttcttattttttcctcaaataaatgctctaaatgacaacaatatttttctttggaatataggagaaatgttgtctgtagtttatagaacaaaaaacaatattaattttactcaaacatatacctataaatagcaaaatcagagaaaCTGGTTAAACGTTTCTTTATATTCAAGAAAAACAACCCAGTTAtttgaacccaagatatttctaACATATGTCTGTGTCgagaaaagttttaaaaaaaaaagtagtttttatgctgtttaaatgaaatttaagtaatttttttgaagtaaattttaacagaaaactgtattttaattgttttcccATTTCCAATACAgccccaaactttttttttcatttgggtGTCGATGATTCCTTGTGGAAATGTTTCTAAAATAGTCAAATTTGTGAGATAAAAAGTGTCAAAGATTCTTAGTTATTGGGTTCAATCagccataaaaaatatatatattttaaatgcccatatcgtcgctgtccgatgaaaaaaaacacttatctccaaaagagcaactttacgggagagagaaaaaaaacttgtaaactcaATGGAAGTctgtaatgtaaaaagagttcatttcaggtcattttgaagagtttgtattggtctgtttatcaaaaaaaatgttgggattcgtctgttcaaattatgtagtaaactaaaaattgacaaaaatggagataagtgtgtaccactttaaaataagactatccttataaagggtttataaatggtttatagatgagattattaagtattgctaattagattgtaaatgccttaaaatcattaataagcagttacaacacattaattaaaaggcaacagtgatccgtTGTTTGCGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236404 lncRNA upstream 5252 9313904 ~ 9314138 (+) True G174583
TU236396 lncRNA upstream 166257 9126708 ~ 9153133 (+) True rexo2
TU236397 lncRNA upstream 168324 9126708 ~ 9151066 (+) False rexo2
TU236399 lncRNA upstream 178092 9140149 ~ 9141298 (+) True LOC111195017
XR_002651415.1 lncRNA upstream 178169 9140397 ~ 9141221 (+) False LOC111195017
TU236442 lncRNA downstream 50098 9371441 ~ 9373948 (+) True G174609
TU236563 lncRNA downstream 439209 9760552 ~ 9762446 (+) True LOC111195021
XR_002651416.1 lncRNA downstream 439213 9760556 ~ 9762344 (+) False LOC111195021
TU236583 lncRNA downstream 498768 9820111 ~ 9820433 (+) True G174719
TU236603 lncRNA downstream 901367 10222710 ~ 10223083 (+) True G174738
XM_022681020.1 mRNA upstream 6007 9206552 ~ 9313383 (+) True LOC103036746
XM_022681021.1 mRNA upstream 6007 9206552 ~ 9313383 (+) False LOC103036746
XM_022681522.1 mRNA upstream 169312 9136955 ~ 9150078 (+) False rexo2
XM_007244712.3 mRNA upstream 228597 8817587 ~ 9090793 (+) True kirrel3
XM_007244713.3 mRNA upstream 635439 8678239 ~ 8683951 (+) True kcnj1
XM_022681022.1 mRNA downstream 33565 9354908 ~ 9498192 (+) True LOC103036148
XM_022681024.1 mRNA downstream 33567 9354910 ~ 9498192 (+) False LOC103036148
XM_022681025.1 mRNA downstream 33567 9354910 ~ 9498192 (+) False LOC103036148
XM_022681026.1 mRNA downstream 33568 9354911 ~ 9498192 (+) False LOC103036148
XM_022681023.1 mRNA downstream 62744 9384087 ~ 9498192 (+) False LOC103036148
TU236173 other upstream 766781 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 1393950 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 2778258 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 4135613 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 4415745 4836714 ~ 4903645 (+) False ptbp3
TU236775 other downstream 1510825 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 1510825 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 2108528 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 2587529 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 2587529 11908872 ~ 11913456 (+) False G175108

Expression Profile