RNA id: TU236404


Basic Information

Item Value
RNA id TU236404
length 235
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G174583
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 9313904 ~ 9314138 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaagtgctacccaatttattattattttttttgtttcttcaaaatagccaccctttgctctgattactgctttgcacccTCTTGgaatcattctctcaatgagcctCAAGAgttggtcacctgaaatggttttccaacagtcttgaaggaaggagttcccagaggtgtttagcacttgttgacCCTTTTGCCTTCTTCCCttcccaaaccatctggattgggttcaggtcatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236396 lncRNA upstream 160771 9126708 ~ 9153133 (+) True rexo2
TU236397 lncRNA upstream 162838 9126708 ~ 9151066 (+) False rexo2
TU236399 lncRNA upstream 172606 9140149 ~ 9141298 (+) True LOC111195017
XR_002651415.1 lncRNA upstream 172683 9140397 ~ 9141221 (+) False LOC111195017
TU236379 lncRNA upstream 219808 9092441 ~ 9094096 (+) True G174559
TU236403 lncRNA downstream 5252 9319390 ~ 9321343 (+) True G174582
TU236442 lncRNA downstream 57303 9371441 ~ 9373948 (+) True G174609
TU236563 lncRNA downstream 446414 9760552 ~ 9762446 (+) True LOC111195021
XR_002651416.1 lncRNA downstream 446418 9760556 ~ 9762344 (+) False LOC111195021
TU236583 lncRNA downstream 505973 9820111 ~ 9820433 (+) True G174719
XM_022681020.1 mRNA upstream 521 9206552 ~ 9313383 (+) True LOC103036746
XM_022681021.1 mRNA upstream 521 9206552 ~ 9313383 (+) False LOC103036746
XM_022681522.1 mRNA upstream 163826 9136955 ~ 9150078 (+) False rexo2
XM_007244712.3 mRNA upstream 223111 8817587 ~ 9090793 (+) True kirrel3
XM_007244713.3 mRNA upstream 629953 8678239 ~ 8683951 (+) True kcnj1
XM_022681022.1 mRNA downstream 40770 9354908 ~ 9498192 (+) True LOC103036148
XM_022681024.1 mRNA downstream 40772 9354910 ~ 9498192 (+) False LOC103036148
XM_022681025.1 mRNA downstream 40772 9354910 ~ 9498192 (+) False LOC103036148
XM_022681026.1 mRNA downstream 40773 9354911 ~ 9498192 (+) False LOC103036148
XM_022681023.1 mRNA downstream 69949 9384087 ~ 9498192 (+) False LOC103036148
TU236173 other upstream 761295 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 1388464 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 2772772 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 4130127 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 4410259 4836714 ~ 4903645 (+) False ptbp3
TU236775 other downstream 1518030 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 1518030 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 2115733 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 2594734 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 2594734 11908872 ~ 11913456 (+) False G175108

Expression Profile