RNA id: TU236603


Basic Information

Item Value
RNA id TU236603
length 374
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G174738
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10222710 ~ 10223083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagtggcgcagtgggtagcacttccgcctcacagcaagacggcctgggttcgattcccggctcgggcgacccgggtctttctgtgtggagtttgcacgttctccccgtgtctgcatgggtttcctccgggttcctccggtttcctcccacagtccaaagacagcatgttcaggctaattggaacttgattgaaattgccccttaggtgtgagtgaatgtgtctgtttgtctgtctgtgtccgtctgccctgcgatggattggcggcctgtccagggtgtatcctgccttctgcccgatgcctgctgggataggctccagcacccccccgcgacccCTCACGGATtaagcggttgacaatgagatgagatgagat

Function

GO:

id name namespace
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236583 lncRNA upstream 402277 9820111 ~ 9820433 (+) True G174719
TU236563 lncRNA upstream 460264 9760552 ~ 9762446 (+) True LOC111195021
XR_002651416.1 lncRNA upstream 460366 9760556 ~ 9762344 (+) False LOC111195021
TU236442 lncRNA upstream 848762 9371441 ~ 9373948 (+) True G174609
TU236403 lncRNA upstream 901367 9319390 ~ 9321343 (+) True G174582
TU236653 lncRNA downstream 88110 10311193 ~ 10311590 (+) True G174783
TU236658 lncRNA downstream 112823 10335906 ~ 10336194 (+) True G174788
TU236660 lncRNA downstream 255208 10478291 ~ 10479571 (+) True G174790
TU236662 lncRNA downstream 260501 10483584 ~ 10484130 (+) True G174792
TU236672 lncRNA downstream 314003 10537086 ~ 10570162 (+) True G174798
XM_022681036.1 mRNA upstream 464226 9752333 ~ 9758484 (+) True LOC103033609
XM_022681037.1 mRNA upstream 464226 9752333 ~ 9758484 (+) False LOC103033609
XM_022681038.1 mRNA upstream 491719 9723554 ~ 9730991 (+) True LOC103030527
XM_007244803.3 mRNA upstream 522884 9698383 ~ 9699826 (+) True LOC103034239
XM_022680694.1 mRNA upstream 529951 9691302 ~ 9692759 (+) True LOC111194977
XM_022680698.1 mRNA downstream 82833 10305916 ~ 10308693 (+) True LOC111194980
XM_022681040.1 mRNA downstream 364948 10588031 ~ 10614469 (+) True LOC103035292
XM_007237791.3 mRNA downstream 397945 10621028 ~ 10631764 (+) True LOC103028819
XM_007237793.3 mRNA downstream 410751 10633834 ~ 10654803 (+) True LOC103029337
XM_022681042.1 mRNA downstream 467759 10690842 ~ 10695462 (+) True LOC103034638
TU236173 other upstream 1670101 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 2297270 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 3681578 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 5038933 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 5319065 4836714 ~ 4903645 (+) False ptbp3
TU236775 other downstream 609085 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 609085 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 1206788 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 1685789 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 1685789 11908872 ~ 11913456 (+) False G175108

Expression Profile